View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_30 (Length: 239)
Name: NF10382_low_30
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11532168 - 11531926
Alignment:
| Q |
1 |
tgtccaaaatatatcaaattttaatgaacaattagaaacgaagattagcctgctaaaaaatgtaa--nnnnnnnagagtttatgtt-------------- |
84 |
Q |
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| T |
11532168 |
tgtccaaaatatataaaattttaatgaacaattaggaacgaagattagcctgctaaaaaatgtaatttttttagagagtttatgttagtaataatattga |
11532069 |
T |
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| Q |
85 |
---gtataaaaaatgaacttacaattggtagcgagtgacaatttggattctttttgcaatcgttagttttccaagcagaagatccttgaccatacaatat |
181 |
Q |
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| T |
11532068 |
tttgtataaaaaatgaacttacaattggtagcgagcgacaatttgaattctttttgcaatcgttagttttccaagcagaagatccttgaccatacaatat |
11531969 |
T |
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| Q |
182 |
accacctccaccaacagtcaatttgttaacatatctaaaattt |
224 |
Q |
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| T |
11531968 |
accacctccaccaacagttaatttgttaacatatctaaaattt |
11531926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 50495920 - 50495987
Alignment:
| Q |
157 |
cagaagatccttgaccatacaatataccacctccaccaacagtcaatttgttaacatatctaaaattt |
224 |
Q |
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| T |
50495920 |
cagaagatccttgaccatccaatgtgccacctccaccaacagttaatttgttaacatatctaaaattt |
50495987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 13615144 - 13615048
Alignment:
| Q |
117 |
tgacaatttggattctttttgcaatcgttagttttccaagcagaagatccttgaccatacaatataccacctccaccaacagtcaatttgttaacat |
213 |
Q |
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| T |
13615144 |
tgacaatttgggttctttttgcaatcattcactttccaagcataagctccttgagcatccaatgatcctcctccaccaaccattaacttgttaacat |
13615048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 26300479 - 26300382
Alignment:
| Q |
118 |
gacaatttggattctttttgcaatcgttagttttccaagcagaagatccttgaccatacaatataccacctccaccaacagtcaatttgttaacatat |
215 |
Q |
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|||||||||| ||||||| ||||| || ||||||||||| ||| ||||||| ||| |||| |||||||||||||| | || |||||||||||| |
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| T |
26300479 |
gacaatttgggttcttttgacaatcattcattttccaagcataagctccttgagcatccaatgatccacctccaccaaccattaacttgttaacatat |
26300382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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