View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_4 (Length: 544)
Name: NF10382_low_4
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 207 - 525
Target Start/End: Original strand, 275120 - 275441
Alignment:
| Q |
207 |
aaagatgccatggctgccctcaatcaggaagttatgcggcttggacagtctctgtataaccaacctggagatgcagatgcagcaggacctacaccacctg |
306 |
Q |
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| T |
275120 |
aaagatgccatggctgccctcaatcaggaagttatgcagcttggacagtctctatataaccaacccggagctgcagatgcagcaggacctacaccacctg |
275219 |
T |
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| Q |
307 |
gtagcgagtctggcccctcagaatcatcatcaggcaagggagcagatggggatgtgattgatgctgattttaccgactctaaatgagttatagagattat |
406 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
275220 |
gtagcgagtctggccccacagactcatcatcaggcaagggagcagatggagatgtgattgatgctgattttactgactctaaatgagttatagagattat |
275319 |
T |
|
| Q |
407 |
ttaataggattgtt------tatgcttcttcgattcgtactaaattggtagtgatttttgtcaatggagagcgagggttttattataa-ttagacnnnnn |
499 |
Q |
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||| |||||||||| | ||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
275320 |
ttagtaggattgttttattatgtgcttcttc----cgtgctaaatgggtagtgatttttgtcaatggagagcgagggttttattataatttagacttttc |
275415 |
T |
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| Q |
500 |
nnataggtgctcactgacgcacgttt |
525 |
Q |
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| T |
275416 |
ttataggtgctcattgacgcacgttt |
275441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 274894 - 275091
Alignment:
| Q |
17 |
tgtacaagttgagagggtggtcaaggaggctgagagattttcaaaggaggacaaggagaagagagatgcaatagacacaaagaaccaggcggactctgtt |
116 |
Q |
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| T |
274894 |
tgtacaggttgagaggatggtcaatgaggctgagagattttcaaaggaggacaaggagaagagggatgcaatagacacaaagaatcaggcggactctgtt |
274993 |
T |
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| Q |
117 |
gtctaccagactgagaagcaattgaaagagctaggagaaaatgtacacgactctgtgaaagagaaggtggaagcaaagctggtagagcttaaagatgc |
214 |
Q |
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| T |
274994 |
gtctaccagactgaaaagcaattgaaagagctaggagaaaaggtacctggccctgtgaaagaaaaggttgaagcaaagttggtagagcttaaagatgc |
275091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 261 - 525
Target Start/End: Complemental strand, 43617531 - 43617255
Alignment:
| Q |
261 |
tataaccaacctggagatgcagatgcagcaggacctacaccacctggt-agcgagtctggcccctcagaa-------tcatcatcaggcaagggagcaga |
352 |
Q |
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| T |
43617531 |
tataaccaacctggagctgcagatgcagcaggacctacaccacctggttagcgagtctggcccctcagaagtcagaatcatcatcaggcaagggagcaga |
43617432 |
T |
|
| Q |
353 |
tggggatgtgattgatgctgattttaccgactctaaatgagttatagagattatttaataggattg-------tttatgcttcttcgattcgtactaaat |
445 |
Q |
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| T |
43617431 |
tggggatgtgattgatgctgattttactgactctaaatgagttatagagattatttaataggattgtttttattttatgctacttc----cgtactaaat |
43617336 |
T |
|
| Q |
446 |
tggtagtga-tttttgtcaatggagagcgagggttttattataattagacnnnnnnnataggtgctcactgacgcacgttt |
525 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| |
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| T |
43617335 |
tggtagtgattttttgtcaatggagagcgagggttttattataaatagactttttttataggtggtcattgacgcacgttt |
43617255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 43618509 - 43618455
Alignment:
| Q |
205 |
ttaaagatgccatggctgccctcaatcaggaagttatgcggcttggacagtctct |
259 |
Q |
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| T |
43618509 |
ttaaagatgccatggctgccctcaatcaggaagttatgcagcttggacagtctct |
43618455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 43618581 - 43618536
Alignment:
| Q |
169 |
ctgtgaaagagaaggtggaagcaaagctggtagagcttaaagatgc |
214 |
Q |
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| T |
43618581 |
ctgtgaaagagaaggtggaagcaaagctggaagagcttaaagatgc |
43618536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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