View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10382_low_9 (Length: 391)
Name: NF10382_low_9
Description: NF10382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10382_low_9 |
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| [»] scaffold0126 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 36797985 - 36798362
Alignment:
| Q |
1 |
ttactaagaatagtgtgatgctaccttaatgagttcagaaggcttaaatccaccaatccacatgaagcaacgttcaattggggtaacccacatgccagaa |
100 |
Q |
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| T |
36797985 |
ttactaagaatagtgtgatgctaccttaatgagttcagaaggcttaaatccaccaatccacatgaagcaacgttcaattggggtaacccacatgccagaa |
36798084 |
T |
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| Q |
101 |
acaagatgaaatatatctgcttttgcaactaagctcttaagttgagctacttgatcatattgagccaagaatttgtccacaaacattctaagctcattct |
200 |
Q |
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| T |
36798085 |
acaagatgaaatatatctgcttttgcaactaagctcttaagttgagctacttgatcatattgagccaagaatttgtccacaaacattctaagctcattct |
36798184 |
T |
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| Q |
201 |
cagaaatgtgctcatgaactgcagctcttagttcacatactaaacggtggtgctcctcaagccacctcgcatattccacgtcgaacattgcagcctctga |
300 |
Q |
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| T |
36798185 |
caggaatgtgctcatgaactgcagctcttagttcacatactaaacggtggtgctcctcaagccacctcgcatattccacgtcgaacattgcagcctctga |
36798284 |
T |
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| Q |
301 |
aatattcatttcaaatatttgtataagaggtt-nnnnnnnntttgatcatggcaaaacatataagaggttaaattgat |
377 |
Q |
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| T |
36798285 |
aatattcatttcaaatatttgtataagaggttaaaaaaaaaattgatcatggcaaaacatataagaggttaaattgat |
36798362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 24632 - 24718
Alignment:
| Q |
22 |
taccttaatgagttcagaaggcttaaatccaccaatccacatgaagcaacgttcaattggggtaacccacatgccagaaacaagatg |
108 |
Q |
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| T |
24632 |
taccttaatgagttcagatggtctgaatccaccaatccacatgaagcaacgttcagctggggttttccacattccaaaaacaagatg |
24718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 24830 - 24912
Alignment:
| Q |
220 |
tgcagctcttagttcacatactaaacggtggtgctcctcaagccacctcgcatattccacgtcgaacattgcagcctctgaaa |
302 |
Q |
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| T |
24830 |
tgctgctcttagctcacacactagcctgtgatgctcctctaaccacctcccatactccacatcaaacattgcagcctctgaaa |
24912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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