View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10383_high_2 (Length: 407)

Name: NF10383_high_2
Description: NF10383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10383_high_2
NF10383_high_2
[»] chr7 (15 HSPs)
chr7 (24-325)||(4306647-4306946)
chr7 (87-203)||(48711432-48711550)
chr7 (56-187)||(14634899-14635032)
chr7 (56-187)||(14644599-14644732)
chr7 (244-341)||(11634643-11634741)
chr7 (86-187)||(9736879-9736984)
chr7 (56-187)||(15947494-15947627)
chr7 (56-187)||(33292298-33292431)
chr7 (27-178)||(7592947-7593101)
chr7 (127-201)||(32817917-32817990)
chr7 (30-178)||(15174481-15174632)
chr7 (127-187)||(28344139-28344200)
chr7 (147-178)||(14777367-14777398)
chr7 (147-178)||(15229505-15229536)
chr7 (130-207)||(11634527-11634603)
[»] chr1 (11 HSPs)
chr1 (21-183)||(26906332-26906493)
chr1 (86-203)||(21633500-21633618)
chr1 (56-187)||(3471058-3471191)
chr1 (56-187)||(14272139-14272272)
chr1 (56-187)||(14282005-14282138)
chr1 (282-364)||(21633337-21633420)
chr1 (24-167)||(28310101-28310236)
chr1 (27-167)||(15810077-15810217)
chr1 (28-143)||(30676766-30676883)
chr1 (149-196)||(21919580-21919626)
chr1 (29-121)||(40999130-40999221)
[»] chr4 (13 HSPs)
chr4 (24-206)||(23622845-23623015)
chr4 (45-205)||(16489950-16490101)
chr4 (56-187)||(20884570-20884703)
chr4 (56-201)||(50516619-50516764)
chr4 (27-178)||(3242380-3242534)
chr4 (27-178)||(54690006-54690160)
chr4 (27-178)||(54699437-54699591)
chr4 (27-178)||(26812449-26812603)
chr4 (27-178)||(26821916-26822070)
chr4 (27-121)||(3918069-3918161)
chr4 (27-121)||(37059089-37059181)
chr4 (86-187)||(11482248-11482353)
chr4 (27-121)||(15842991-15843083)
[»] chr5 (26 HSPs)
chr5 (28-203)||(42732670-42732842)
chr5 (24-178)||(5600532-5600676)
chr5 (24-178)||(5610178-5610322)
chr5 (24-178)||(31150724-31150868)
chr5 (87-203)||(26652541-26652656)
chr5 (87-203)||(26924126-26924241)
chr5 (27-178)||(24422218-24422372)
chr5 (244-341)||(24290980-24291078)
chr5 (27-178)||(30444922-30445076)
chr5 (27-178)||(30454294-30454448)
chr5 (86-187)||(11223309-11223414)
chr5 (244-331)||(13815686-13815772)
chr5 (27-121)||(18569042-18569134)
chr5 (86-187)||(33955649-33955754)
chr5 (27-178)||(24412769-24412923)
chr5 (244-341)||(24244356-24244454)
chr5 (27-178)||(30459352-30459506)
chr5 (27-178)||(22489126-22489280)
chr5 (149-196)||(22457797-22457843)
chr5 (127-187)||(20035932-20035993)
chr5 (127-187)||(20834364-20834425)
chr5 (78-178)||(17553934-17554025)
chr5 (149-196)||(22448479-22448525)
chr5 (27-121)||(4635948-4636040)
chr5 (130-207)||(24244240-24244316)
chr5 (130-207)||(24290864-24290940)
[»] chr3 (18 HSPs)
chr3 (24-178)||(17529950-17530094)
chr3 (25-178)||(48978622-48978765)
chr3 (25-178)||(48988162-48988305)
chr3 (24-206)||(54624581-54624751)
chr3 (17-135)||(32877856-32877973)
chr3 (27-178)||(24794639-24794793)
chr3 (86-187)||(46305722-46305827)
chr3 (27-178)||(28367746-28367900)
chr3 (27-178)||(28375564-28375718)
chr3 (27-178)||(28383386-28383540)
chr3 (86-187)||(5385623-5385728)
chr3 (27-121)||(38529270-38529362)
chr3 (27-178)||(28351813-28351967)
chr3 (27-162)||(7784100-7784237)
chr3 (24-178)||(19388712-19388860)
chr3 (87-187)||(23486974-23487078)
chr3 (56-187)||(13328399-13328532)
chr3 (147-178)||(17535002-17535033)
[»] chr2 (10 HSPs)
chr2 (24-178)||(1800445-1800589)
chr2 (25-178)||(1790951-1791094)
chr2 (24-178)||(22632354-22632498)
chr2 (27-121)||(24022835-24022927)
chr2 (86-187)||(35877449-35877554)
chr2 (86-187)||(35884938-35885043)
chr2 (86-187)||(36724651-36724756)
chr2 (27-121)||(31710559-31710651)
chr2 (127-187)||(3396856-3396917)
chr2 (282-331)||(20011878-20011925)
[»] scaffold0021 (3 HSPs)
scaffold0021 (24-206)||(99909-100079)
scaffold0021 (56-187)||(143102-143235)
scaffold0021 (147-206)||(180832-180889)
[»] scaffold0247 (1 HSPs)
scaffold0247 (24-205)||(24520-24689)
[»] chr8 (24 HSPs)
chr8 (86-203)||(31575560-31575676)
chr8 (243-331)||(18143741-18143828)
chr8 (56-187)||(12925287-12925420)
chr8 (56-187)||(20044751-20044884)
chr8 (56-187)||(42712299-42712432)
chr8 (244-341)||(18232703-18232801)
chr8 (244-341)||(18242154-18242252)
chr8 (244-341)||(18251605-18251703)
chr8 (56-187)||(12767564-12767697)
chr8 (56-187)||(20030112-20030245)
chr8 (27-178)||(7789171-7789325)
chr8 (87-207)||(18143579-18143702)
chr8 (27-121)||(20714072-20714164)
chr8 (244-306)||(25037339-25037400)
chr8 (244-306)||(25051376-25051437)
chr8 (244-329)||(18883473-18883557)
chr8 (56-207)||(18883281-18883433)
chr8 (29-121)||(15833953-15834044)
chr8 (45-178)||(25051173-25051307)
chr8 (130-207)||(18232841-18232917)
chr8 (130-207)||(18242292-18242368)
chr8 (130-207)||(18251743-18251819)
chr8 (56-178)||(25037147-25037270)
chr8 (130-178)||(4843921-4843968)
[»] chr6 (8 HSPs)
chr6 (23-206)||(12414990-12415161)
chr6 (56-187)||(23884425-23884558)
chr6 (27-178)||(23895709-23895863)
chr6 (86-187)||(22066226-22066331)
chr6 (28-103)||(10259872-10259946)
chr6 (27-178)||(18420492-18420646)
chr6 (27-121)||(23110311-23110404)
chr6 (86-187)||(17512371-17512476)
[»] scaffold0269 (1 HSPs)
scaffold0269 (24-124)||(14903-15002)
[»] scaffold0028 (2 HSPs)
scaffold0028 (27-178)||(94524-94678)
scaffold0028 (27-178)||(103965-104119)
[»] scaffold0223 (1 HSPs)
scaffold0223 (24-163)||(27146-27289)
[»] scaffold0206 (1 HSPs)
scaffold0206 (56-187)||(2042-2175)
[»] scaffold0040 (2 HSPs)
scaffold0040 (27-121)||(10045-10137)
scaffold0040 (27-178)||(30916-31070)
[»] scaffold0482 (1 HSPs)
scaffold0482 (27-178)||(3474-3628)
[»] scaffold0010 (2 HSPs)
scaffold0010 (244-329)||(256748-256832)
scaffold0010 (130-178)||(256901-256948)
[»] scaffold0001 (1 HSPs)
scaffold0001 (27-178)||(408269-408423)
[»] scaffold0053 (1 HSPs)
scaffold0053 (149-198)||(2410-2458)
[»] scaffold0101 (1 HSPs)
scaffold0101 (127-163)||(42161-42197)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 4306647 - 4306946
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||| ||||||| |||||   |||||||||||||||||| |||||||||||||||||||||||||||||||  || ||| ||||||| ||||    
T  4306647 tatcagaaacttatgaatagcactatg--ttgttgatcacaccagatcagtccgattacactctgtattatcaacctcagcagacttctacaattattga 4306744  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtgannnnnnnnggtaagag 223  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||        ||| |||     
T  4306745 tcacacaagaaaggttggaacaactctatatcaaactattaagcccaatagacttgaaacctag-tttacactttgtatggtgatttgttttggttaga- 4306842  T
Q  224 aaataatatct----cagaagatattttacaaacacaaactcaaatagata--gagagacaagtaaatatagtgagagcttatggagtttgcttatattt 317  Q
    |||| ||||||    || |||| |||||||||| |||||||| || |||||  ||||||||   |||||||||||||| |||||||||||| |||| |||    
T  4306843 aaatgatatctcaaacaaaagagattttacaaatacaaactc-aagagataatgagagaca---aaatatagtgagagattatggagtttgtttatgttt 4306938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 48711432 - 48711550
Alignment:
Q  87 tgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagac 183  Q
    ||||||||||||||||| |||||| || |||||||     ||||||||||||||||  |||  ||||||||||||||||||||| |||||||||| ||||    
T  48711432 tgtattatcaacctcaacaggcttctataattctttgctttcacacaagaaaggttaaaacttttctatctcaaactattaagcacaatagacttgagac 48711531  T
Q  184 ctagctttacactttgtatg 203  Q
    ||||  ||||||||||||||    
T  48711532 ctag-attacactttgtatg 48711550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 14634899 - 14635032
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  14634899 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaacttttccta 14634996  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  14634997 tctcaaactattaagcccaatagacttgagatctag 14635032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 14644599 - 14644732
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  14644599 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaacttttccta 14644696  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  14644697 tctcaaactattaagcccaatagacttgagatctag 14644732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 11634643 - 11634741
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 341  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  11634643 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 11634741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 9736984 - 9736879
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||    
T  9736984 ctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaacttttcctatctcaaactattaagcccaatagacttgag 9736885  T
Q  182 acctag 187  Q
    | ||||    
T  9736884 atctag 9736879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 15947494 - 15947627
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  15947494 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 15947591  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||| ||| ||| ||||    
T  15947592 tctcaaactattaagcccaatagccttgagatctag 15947627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 33292298 - 33292431
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  33292298 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 33292395  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    |||||||||||| |||||||||||||| ||| ||||    
T  33292396 tctcaaactattgagcccaatagacttgagatctag 33292431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 7593101 - 7592947
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||| | ||||||||||||||| |||||| | |||| |||||||||||||||||  |||||| |||||||| |||  |    
T  7593101 cagaaacttctgactagcactacaatatcttgatcacaccagatcagtccg-taacac-ctgtattatcaacctcatcaggcttatacaattctttgcac 7593004  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  7593003 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 7592947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 32817990 - 32817917
Alignment:
Q  127 cacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgta 201  Q
    ||||||||||||| ||||  | |||||| ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  32817990 cacaagaaaggttcgaactttcctatcttaaactattaagcccaatagacttgagatctag-tttacactttgta 32817917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 15174632 - 15174481
Alignment:
Q  30 aaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatca-- 126  Q
    |||||||||| ||| |||| ||  | ||||||||||||||| |||||| |||||| |||||||||||||||||  |||||| || ||||| |||  ||      
T  15174632 aaacttctgactagcactacaagatcttgatcacaccagatcagtccg-ttacac-ctgtattatcaacctcagcaggcttatataattctttgcacact 15174535  T
Q  127 --cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
      || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  15174534 agcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 15174481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 28344200 - 28344139
Alignment:
Q  127 cacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||| ||||||  ||| ||||||||||||||||||||||||||||| ||| ||||    
T  28344200 cacaagaaaggctggaactcttcctatctcaaactattaagcccaatagacttgagatctag 28344139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 178
Target Start/End: Complemental strand, 14777398 - 14777367
Alignment:
Q  147 ttctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||||||||||||||||||||||    
T  14777398 ttctatctcaaactattaagcccaatagactt 14777367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 178
Target Start/End: Complemental strand, 15229536 - 15229505
Alignment:
Q  147 ttctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||||||||||||||||||||||    
T  15229536 ttctatctcaaactattaagcccaatagactt 15229505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 11634527 - 11634603
Alignment:
Q  130 aagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 207  Q
    ||||||||||||||   ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  11634527 aagaaaggttggaatt-ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 11634603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 26906332 - 26906493
Alignment:
Q  21 tgttatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattct 120  Q
    ||||| ||||||||||||| ||| ||||||| || ||| ||||||||||| |||| | ||||||||||||||||||||||||  || |||||||||||||    
T  26906332 tgttaacagaaacttctgactagcactataagttcttggtcacaccagatcagtctg-ttacactctgtattatcaacctcagcagacttttacaattct 26906430  T
Q  121 tgatcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagac 183  Q
    |||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||| ||||    
T  26906431 tgatcacacaagaaaggttggaacaattctttctcaaactattatgacaaatagacttgagac 26906493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 21633618 - 21633500
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttg--atcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagac 183  Q
    |||||||||||||||||  |||||| || | | ||||   |||||||||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||    
T  21633618 ctgtattatcaacctcagcaggcttctaaattccttgctttcacacaagaaatgttggaacttttctatctcaaactattatgcccaatagacttgagac 21633519  T
Q  184 ctagctttacactttgtatg 203  Q
    ||||  ||||||||||||||    
T  21633518 ctag-attacactttgtatg 21633500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 3471058 - 3471191
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||| ||||  ||| ||    
T  3471058 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttagaactcttccta 3471155  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    |||||||||||||| |||||||||||| ||| ||||    
T  3471156 tctcaaactattaaacccaatagacttgagatctag 3471191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 14272139 - 14272272
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || |||| |||| ||||||||  ||| ||    
T  14272139 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaggaaatgttggaactcttccta 14272236  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  14272237 tctcaaactattaagcccaatagacttgagatctag 14272272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 14282005 - 14282138
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || |||| |||| ||||||||  ||| ||    
T  14282005 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaggaaatgttggaactcttccta 14282102  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  14282103 tctcaaactattaagcccaatagacttgagatctag 14282138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 364
Target Start/End: Complemental strand, 21633420 - 21633337
Alignment:
Q  282 aaatatagtgagagcttatggagtttgcttatatttgttgaagagcttg--agagagaatgaaggctttttgctttgagagagat 364  Q
    |||||||||||||| |||||||||||| || | |||||| |||||||||  |||||||||||  || ||||||||||||||||||    
T  21633420 aaatatagtgagagattatggagtttgtttgtgtttgttaaagagcttgatagagagaatgattgc-ttttgctttgagagagat 21633337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 28310101 - 28310236
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    ||||| ||||||| |||||  ||||||| |||||||||||||||||| |||||| ||||| |||||||||| | ||| || ||||        |||||||    
T  28310101 tatcaaaaacttccgaataacactataagttgttgatcacaccagatcagtccg-ttacagtctgtattattacccttaacaggc--------ttcttga 28310191  T
Q  124 tcacacaagaaaggttgga-acaattctatctcaaactattaagc 167  Q
    |||| ||| |||||||| | ||||  |||||||||||||||||||    
T  28310192 tcactcaaaaaaggttgaacacaaccctatctcaaactattaagc 28310236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 15810077 - 15810217
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||||||  | ||||||||||||||| |||||| |||||| ||||||||||||| ||   | |||| |||||||| |||| |    
T  15810077 cagaaacttctgagtagcactataaggtcttgatcacaccagatcagtccg-ttacac-ctgtattatcaacttcggcatgcttctacaattctttgaac 15810174  T
Q  126 --acacaagaaaggttggaacaattctatctcaaactattaagc 167  Q
       || ||||||||||||||   |||||||||||||||||||||    
T  15810175 cagcaaaagaaaggttggaa-ttttctatctcaaactattaagc 15810217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 30676883 - 30676766
Alignment:
Q  28 agaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt---gat 124  Q
    |||||||| ||||||| ||||||  || |||||||||| |||| |||| | ||||||||||||||||||| ||||| |  ||| || |||||||     |    
T  30676883 agaaacttatgaatagcactatatgttcttgatcacacaagatcagtctg-ttacactctgtattatcaatctcaacatacttatataattctttgcttt 30676785  T
Q  125 cacacaagaaaggttggaa 143  Q
    |||||||||||||||||||    
T  30676784 cacacaagaaaggttggaa 30676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 21919580 - 21919626
Alignment:
Q  149 ctatctcaaactattaagcccaatagacttaagacctagctttacact 196  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  21919580 ctatctcaaactattaagcccaatagacttgagaactag-tttacact 21919626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 40999130 - 40999221
Alignment:
Q  29 gaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||| ||| ||| |||||||  | ||||||||||||||| |||  | ||||||  ||||||||||||||||| || ||| ||||||||||    
T  40999130 gaaacttatgactagcactataaggttttgatcacaccagatcagtttg-ttacaccatgtattatcaacctcaacagacttctacaattctt 40999221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 23623015 - 23622845
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  23623015 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtctg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 23622917  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 206  Q
    ||||||||||||         | |||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  23622916 tcacacaagaaa---------agttctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 23622845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 16489950 - 16490101
Alignment:
Q  45 actataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttgatcacacaagaaaggttggaac 144  Q
    ||||||||||||||||||||||| || |||| | |||||||| |||||||||||||||  || ||| ||| |||||||||||||||| |||      ||     
T  16489950 actataatttgttgatcacaccatatcagtctg-ttacactcagtattatcaacctcagcagacttctacgattcttgatcacacaaaaaa------aaa 16490042  T
Q  145 aattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggt 205  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||  |||| |||||||||||    
T  16490043 aattctatctcaaactattaagcccaataaacttgagatctag--ttacgctttgtatggt 16490101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 20884570 - 20884703
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  20884570 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 20884667  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  20884668 tctcaaactattaagcccaatagacttgagatctag 20884703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 50516619 - 50516764
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattctat 152  Q
    ||||||||||||||| |||||| | || || ||||||||||||||||  ||||| |||||||||||     || | ||||||||||||||||  | ||||    
T  50516619 ttgatcacaccagatcagtccg-taaccct-tgtattatcaacctcagcaggctgttacaattctttgctttcgctcaagaaaggttggaactttcctat 50516716  T
Q  153 ctcaaactattaagcccaatagacttaagacctagctttacactttgta 201  Q
    |||||||||||||||||||||||||| ||| |||  |||||||||||||    
T  50516717 ctcaaactattaagcccaatagacttgagatcta-ttttacactttgta 50516764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 3242380 - 3242534
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  3242380 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 3242477  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  3242478 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 3242534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 54690006 - 54690160
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  54690006 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 54690103  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  54690104 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 54690160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 54699437 - 54699591
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  54699437 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 54699534  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  54699535 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 54699591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 26812603 - 26812449
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||| | ||||||||||||||| |||||| | |||| |||||||||||||||||  |||||| |||||||| |||  |    
T  26812603 cagaaacttctgactagcactacaatatcttgatcacaccagatcagtccg-taacac-ctgtattatcaacctcagcaggcttatacaattctttgcac 26812506  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  26812505 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 26812449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 26822070 - 26821916
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||| | ||||||||||||||| |||||| | |||| |||||||||||||||||  |||||| |||||||| |||  |    
T  26822070 cagaaacttctgactagcactacaatatcttgatcacaccagatcagtccg-taacac-ctgtattatcaacctcagcaggcttatacaattctttgcac 26821973  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  26821972 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 26821916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 3918161 - 3918069
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||||| ||| | || ||||| ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| ||||||||||    
T  3918161 cagaaacttctgactagcattacaatttcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctt 3918069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 37059181 - 37059089
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||||| ||| |||| ||  | ||||||||||||||| |||||| |||||| |||||||||||||||||  |||||| ||||||||||    
T  37059181 cagaaacttctgactagcactacaagatcttgatcacaccagatcagtccg-ttacac-ctgtattatcaacctcagcaggcttatacaattctt 37059089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 11482353 - 11482248
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||||||||||||||   ||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||| ||||||||| ||    
T  11482353 ctgtattatcaacctcagccggcttctacaattctttgctttcgcacaagaaaggttggaactcttcctatctcaaactattaagccgaatagacttgag 11482254  T
Q  182 acctag 187  Q
    | ||||    
T  11482253 atctag 11482248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 15842991 - 15843083
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||||| ||| |||||||  | ||||||||| ||||| |||| | |||||| ||||||||||||||| |  |||||| ||||||||||    
T  15842991 cagaaacttctgactagcactataagatcttgatcacatcagatcagtctg-ttacac-ctgtattatcaacctaagcaggcttctacaattctt 15843083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 42732670 - 42732842
Alignment:
Q  28 agaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttgatcac 127  Q
    |||||||||| | ||| |||||||  | ||||||||||||||| ||||| |  || | |||||||||||||||||| |||||| ||||||||||||||||    
T  42732670 agaaacttctaactagcactataaggtcttgatcacaccagatcagtcc-agaaccc-ctgtattatcaacctcaacaggcttctacaattcttgatcac 42732767  T
Q  128 acaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatg 203  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  42732768 acaagaaaggttgaaactcttctatctcaaactattaagcccaatagacttgagatctag-tttacactttgtatg 42732842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 5600676 - 5600532
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  5600676 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 5600578  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||         | ||||||||||||||||||||||||||||||||    
T  5600577 tcacacaagaaa---------agttctatctcaaactattaagcccaatagactt 5600532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 5610322 - 5610178
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  5610322 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 5610224  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||         | ||||||||||||||||||||||||||||||||    
T  5610223 tcacacaagaaa---------agttctatctcaaactattaagcccaatagactt 5610178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 31150724 - 31150868
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  31150724 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 31150822  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||         | ||||||||||||||||||||||||||||||||    
T  31150823 tcacacaagaaa---------agttctatctcaaactattaagcccaatagactt 31150868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 26652656 - 26652541
Alignment:
Q  87 tgtattatcaacctcaataggcttttacaattcttgatcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagaccta 186  Q
    |||||||||||||||  | | ||| ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| ||||||| ||| |||    
T  26652656 tgtattatcaacctcggtggacttctacaattcttgatcacacaagaaaggttgtaactcttctatctcaaactattaagcccagtagacttgagatcta 26652557  T
Q  187 gctttacactttgtatg 203  Q
    | |||||||||||||||    
T  26652556 g-tttacactttgtatg 26652541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 26924241 - 26924126
Alignment:
Q  87 tgtattatcaacctcaataggcttttacaattcttgatcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagaccta 186  Q
    |||||||||||||||  | | ||| ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| ||||||| ||| |||    
T  26924241 tgtattatcaacctcggtggacttctacaattcttgatcacacaagaaaggttgtaactcttctatctcaaactattaagcccagtagacttgagatcta 26924142  T
Q  187 gctttacactttgtatg 203  Q
    | |||||||||||||||    
T  26924141 g-tttacactttgtatg 26924126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 24422372 - 24422218
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  24422372 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 24422275  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  24422274 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 24422218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 24290980 - 24291078
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 341  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  24290980 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 24291078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 30444922 - 30445076
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||| || |||| |||||||||||||||||  |||||| |||||||| |||  |    
T  30444922 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtcc-ataacac-ctgtattatcaacctcagcaggcttatacaattctttgcac 30445019  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  30445020 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 30445076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 30454294 - 30454448
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| |||||| | |||| |||||||||||||||||  |||||| |||||||| |||  |    
T  30454294 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg-taacac-ctgtattatcaacctcagcaggcttatacaattctttgcac 30454391  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  30454392 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 30454448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 11223414 - 11223309
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||    
T  11223414 ctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttcctatctcaaactattaagcccaatagacttgag 11223315  T
Q  182 acctag 187  Q
    | ||||    
T  11223314 atctag 11223309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 13815686 - 13815772
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga 331  Q
    ||||||||| ||| ||||||| |||||  || |||| |||||||||||||||||||||||||||| || | |||||||||||||||||    
T  13815686 ttttacaaatacagactcaaagagataatgatacaa-taaatatagtgagagcttatggagtttgattgtgtttgttgaagagcttga 13815772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 18569134 - 18569042
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| ||||||||||    
T  18569134 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctt 18569042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 33955649 - 33955754
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||    
T  33955649 ctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttcctatctcaaactattaagcccaatagacttgag 33955748  T
Q  182 acctag 187  Q
    | ||||    
T  33955749 atctag 33955754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 24412923 - 24412769
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| |||| |  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  24412923 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtctg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 24412826  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  24412825 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 24412769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 24244356 - 24244454
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 341  Q
    |||||||| |||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  24244356 ttttacaagcacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 24244454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 30459352 - 30459506
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| |||||| | |||| ||||||||||||||||   |||||| |||||||| |||  |    
T  30459352 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg-taacac-ctgtattatcaacctcggcaggcttatacaattctttgcac 30459449  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  30459450 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 30459506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 22489280 - 22489126
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||| ||| ||| |||||||  | ||||||||||||||| |||||| |||||| |||||||||||||||||  || ||| |||||||| |||  |    
T  22489280 cagaaacttatgactagcactataagatcttgatcacaccagatcagtccg-ttacac-ctgtattatcaacctcagcagacttctacaattctttgcac 22489183  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  22489182 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 22489126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 22457797 - 22457843
Alignment:
Q  149 ctatctcaaactattaagcccaatagacttaagacctagctttacact 196  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  22457797 ctatctcaaactattaagcccaatagacttaagatctag-tttacact 22457843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 20035993 - 20035932
Alignment:
Q  127 cacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||| ||||    
T  20035993 cacaaaaaaggttggaactcttcctatctcaaactattaagcccaatagacttgagatctag 20035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 20834425 - 20834364
Alignment:
Q  127 cacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||  ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  20834425 cacaagaaaggttggaactcttcctatgtcaaactattaagcccaatagacttgagatctag 20834364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 17553934 - 17554025
Alignment:
Q  78 attacactctgtattatcaacctcaataggcttttacaattcttgatcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagact 177  Q
    ||||||| ||||||| | ||||| | |||| || |||||||||||| ||||||||||||||     ||    ||||||||||||||||||||||||||||    
T  17553934 attacaccctgtattgttaaccttagtaggtttctacaattcttgagcacacaagaaaggt-----ca----tatctcaaactattaagcccaatagact 17554024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 22448479 - 22448525
Alignment:
Q  149 ctatctcaaactattaagcccaatagacttaagacctagctttacact 196  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  22448479 ctatctcaaactattaagcccaatagactttagatctag-tttacact 22448525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 4636040 - 4635948
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    |||||||||||||  || |||||||  | |||||||||||| || |||||| |||||| |||| ||||||||||||  |||||| ||||||||||    
T  4636040 cagaaacttctgaccagcactataagatcttgatcacaccatatcagtccg-ttacac-ctgttttatcaacctcagcaggcttctacaattctt 4635948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 24244240 - 24244316
Alignment:
Q  130 aagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 207  Q
    ||||||||||||||   ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  24244240 aagaaaggttggaatt-ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 24244316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 24290864 - 24290940
Alignment:
Q  130 aagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 207  Q
    ||||||||||||||   ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  24290864 aagaaaggttggaatt-ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 24290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 17529950 - 17530094
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  17529950 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 17530048  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||         | ||||||||||||||||||||||||||||||||    
T  17530049 tcacacaagaaa---------agttctatctcaaactattaagcccaatagactt 17530094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 48978765 - 48978622
Alignment:
Q  25 atcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttgat 124  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| |||||||||    
T  48978765 atcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttgat 48978667  T
Q  125 cacacaagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    |||||||||||         | ||||||||||||||||||||||||||||||||    
T  48978666 cacacaagaaa---------agttctatctcaaactattaagcccaatagactt 48978622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 48988305 - 48988162
Alignment:
Q  25 atcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttgat 124  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| |||||||||    
T  48988305 atcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttgat 48988207  T
Q  125 cacacaagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    |||||||||||         | ||||||||||||||||||||||||||||||||    
T  48988206 cacacaagaaa---------agttctatctcaaactattaagcccaatagactt 48988162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 54624751 - 54624581
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||||| |||| | ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  54624751 tatcagaaacttctgaatagcactataatatgttgatcataccagatcagtctg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 54624653  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 206  Q
    ||||||||||||         |  ||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  54624652 tcacacaagaaa---------agatctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 54624581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 32877973 - 32877856
Alignment:
Q  17 atcatgttatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaa 116  Q
    |||||| ||||| |||||||||||||  |||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||  |||||| ||| |    
T  32877973 atcatgctatcataaacttctgaataacactataatttgttgatcacaccagatcagtctg-ttacactctgtattatcaacctcagcaggcttctacga 32877875  T
Q  117 ttcttgatcacacaagaaa 135  Q
    |||||||||||||||||||    
T  32877874 ttcttgatcacacaagaaa 32877856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 24794639 - 24794793
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  24794639 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 24794736  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  24794737 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 24794793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 46305722 - 46305827
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||    
T  46305722 ctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttcctatctcaaactattaagcccaatagacttgag 46305821  T
Q  182 acctag 187  Q
    | ||||    
T  46305822 atctag 46305827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 28367746 - 28367900
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||| | ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  28367746 cagaaacttctgactagcactacaatatcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 28367843  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  28367844 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 28367900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 28375564 - 28375718
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||| | ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  28375564 cagaaacttctgactagcactacaatatcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 28375661  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  28375662 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 28375718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 28383386 - 28383540
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||| | ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  28383386 cagaaacttctgactagcactacaatatcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 28383483  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  28383484 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 28383540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 5385728 - 5385623
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||| ||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||    
T  5385728 ctgtatcatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttcctatctcaaactattaagcccaatagacttgag 5385629  T
Q  182 acctag 187  Q
    | ||||    
T  5385628 atctag 5385623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 38529270 - 38529362
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    |||||| |||||| ||| |||||||  | ||||||||||||||| |||| | ||||||| |||||||||||||||| ||||||| ||||||||||    
T  38529270 cagaaatttctgactagcactataagatcttgatcacaccagatgagtctg-ttacact-tgtattatcaacctcagtaggcttctacaattctt 38529362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 28351813 - 28351967
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||| | ||||||||||||||| ||||||  ||  ||||||||||||||||| |  |||||| |||||||| |||  |    
T  28351813 cagaaacttctgactagcactacaatatcttgatcacaccagatcagtccg--taacctctgtattatcaaccttagcaggcttatacaattctttgcac 28351910  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  28351911 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 28351967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 7784100 - 7784237
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt---ga 123  Q
    ||||||||| ||| ||  |||||||  | ||||||||||||||| |||| | |||||| |||||||||||||||||  |||||| ||||||||||         
T  7784100 cagaaacttatgactaacactataaggtcttgatcacaccagatcagtctg-ttacaccctgtattatcaacctcagcaggcttctacaattcttttcct 7784198  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactat 162  Q
    ||  |||||||||||||  |||||||| |||||||||||    
T  7784199 tcctacaagaaaggttgttacaattctttctcaaactat 7784237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 19388860 - 19388712
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    ||||| |||||||||||||| ||||||| |||||||| |||||| || |||| |||| |||| |||||||| | |||||  ||||        ||| |||    
T  19388860 tatcataaacttctgaatagcactataagttgttgatgacaccatatcagtctgattgcactatgtattattatcctcagcaggc--------ttcatga 19388769  T
Q  124 tcacacaagaaagg-ttggaacaattc-tatctcaaactattaagcccaatagactt 178  Q
    |||||||||||||| ||| ||||| || |||||||||||| ||| || |||||||||    
T  19388768 tcacacaagaaaggtttgaaacaactcttatctcaaactactaatcctaatagactt 19388712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 23487078 - 23486974
Alignment:
Q  87 tgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaaga 182  Q
    ||||||||||||||||  |||||| ||||||||||     |  |||||||||| |||||||  ||| ||||||||||||||||||||||||||||| |||    
T  23487078 tgtattatcaacctcagcaggcttctacaattctttgcttttgcacaagaaagcttggaactcttcctatctcaaactattaagcccaatagacttgaga 23486979  T
Q  183 cctag 187  Q
     ||||    
T  23486978 tctag 23486974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 13328399 - 13328532
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| |||||| | || || ||||||||||||||||  | |||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  13328399 ttgatcacaccagatcagtccg-taaccct-tgtattatcaacctcagcaagcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 13328496  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    |||||||||||||| |||| ||||||| ||| ||||    
T  13328497 tctcaaactattaatcccagtagacttgagatctag 13328532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 17535002 - 17535033
Alignment:
Q  147 ttctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||||||||||||||||||||||    
T  17535002 ttctatctcaaactattaagcccaatagactt 17535033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 1800589 - 1800445
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  1800589 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 1800491  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||         | ||||||||||||||||||||||||||||||||    
T  1800490 tcacacaagaaa---------agttctatctcaaactattaagcccaatagactt 1800445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 1791094 - 1790951
Alignment:
Q  25 atcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttgat 124  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| |||||||||    
T  1791094 atcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttgat 1790996  T
Q  125 cacacaagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    |||||||||||         | ||||||||||||||||||||||||||||||||    
T  1790995 cacacaagaaa---------agttctatctcaaactattaagcccaatagactt 1790951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 22632498 - 22632354
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||| ||  |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  22632498 tatcagaaacttctgactaacactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 22632400  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||         | ||||||||||||||||||||||||||||||||    
T  22632399 tcacacaagaaa---------agttctatctcaaactattaagcccaatagactt 22632354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 24022835 - 24022927
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||||| ||| |||||||  | ||||||||||||||| |||||| |||||| |||||||||||||||||| |||||| ||||||||||    
T  24022835 cagaaacttctgactagcactataagatcttgatcacaccagatcagtccg-ttacac-ctgtattatcaacctcaacaggcttctacaattctt 24022927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 35877554 - 35877449
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||    
T  35877554 ctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttcctatctcaaactattaagcccaatagacttgag 35877455  T
Q  182 acctag 187  Q
    | ||||    
T  35877454 atctag 35877449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 35885043 - 35884938
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||    
T  35885043 ctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttcctatctcaaactattaagcccaatagacttgag 35884944  T
Q  182 acctag 187  Q
    | ||||    
T  35884943 atctag 35884938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 36724756 - 36724651
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||    
T  36724756 ctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttcctatctcaaactattaagcccaatagacttgag 36724657  T
Q  182 acctag 187  Q
    | ||||    
T  36724656 atctag 36724651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 31710559 - 31710651
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||||| ||| |||||||  | ||||||||||||||| |||||| |||||| |||||||||||||||||  || ||| ||||||||||    
T  31710559 cagaaacttctgactagcactataagatcttgatcacaccagatcagtccg-ttacac-ctgtattatcaacctcagcagacttctacaattctt 31710651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 3396917 - 3396856
Alignment:
Q  127 cacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||| ||||    
T  3396917 cacaagaaaggttggaactcttcctatctcaaactattaagcccaatagacttgagatctag 3396856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 20011878 - 20011925
Alignment:
Q  282 aaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga 331  Q
    |||||||||||||  ||||||||||||||||| |||||||||||| ||||    
T  20011878 aaatatagtgaga--ttatggagtttgcttatgtttgttgaagagattga 20011925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 100079 - 99909
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| |||||||||||||| || |||| | ||||||||||||||||||||||||| | |||| ||  ||||||||    
T  100079 tatcagaaacttctgaatagcactataatatgttgatcacaccaaatcagtctg-ttacactctgtattatcaacctcaacaagcttctatgattcttga 99981  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 206  Q
    ||||||||||||         | |||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  99980 tcacacaagaaa---------agttctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 99909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 143235 - 143102
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  143235 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 143138  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  143137 tctcaaactattaagcccaatagacttgagatctag 143102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 180889 - 180832
Alignment:
Q  147 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 206  Q
    |||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  180889 ttctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 180832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 24689 - 24520
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  24689 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtccg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 24591  T
Q  124 tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggt 205  Q
    |||||||         |||| | |||||| |||||||||||| |||||||||||| ||| ||||  ||||||||||||||||    
T  24590 tcacaca---------ggaaaagttctatatcaaactattaaacccaatagacttgagatctag--ttacactttgtatggt 24520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 31575560 - 31575676
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttgatcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacct 185  Q
    |||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| ||    
T  31575560 ctgtattatcaacctcagcaagcttctacaattcttgatcacacaagaaaggttggaactcttctatctcaaactattaagcccaatagacttgagatct 31575659  T
Q  186 agctttacactttgtatg 203  Q
    || |||||||||||||||    
T  31575660 ag-tttacactttgtatg 31575676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 331
Target Start/End: Original strand, 18143741 - 18143828
Alignment:
Q  243 attttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga 331  Q
    |||||||||||||||||||||| |||||  || |||| |||||||||||||||||||||||||||| || | |||||||||||||||||    
T  18143741 attttacaaacacaaactcaaagagataatgatacaa-taaatatagtgagagcttatggagtttgattgtgtttgttgaagagcttga 18143828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 12925420 - 12925287
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttgat---cacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||  |   | ||||||||||||||||||  ||| ||    
T  12925420 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgttttcgcacaagaaaggttggaactcttccta 12925323  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  12925322 tctcaaactattaagcccaatagacttgagatctag 12925287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 20044884 - 20044751
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  20044884 ttgatcacaccagatcagtccg--taacccctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 20044787  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  20044786 tctcaaactattaagcccaatagacttgagatctag 20044751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 42712299 - 42712432
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  42712299 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 42712396  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  42712397 tctcaaactattaagcccaatagacttgagatctag 42712432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 18232801 - 18232703
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 341  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  18232801 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 18232703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 18242252 - 18242154
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 341  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  18242252 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 18242154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 18251703 - 18251605
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 341  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  18251703 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 18251605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 12767697 - 12767564
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  12767697 ttgatcacaccagatcagtccg--taacccctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 12767600  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    |||||||||||||||| |||||||||| ||| ||||    
T  12767599 tctcaaactattaagctcaatagacttgagatctag 12767564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 20030245 - 20030112
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  20030245 ttgatcacaccagatcagtccg--taatccctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 20030148  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||| ||||||||| ||| ||||    
T  20030147 tctcaaactattaagccaaatagacttgagatctag 20030112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 7789171 - 7789325
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| |||| |  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  7789171 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtctg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 7789268  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  7789269 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 7789325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 18143579 - 18143702
Alignment:
Q  87 tgtattatcaacctcaataggctt-ttacaattcttga---tcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaaga 182  Q
    |||||||||||||||| ||||||| |||||||||||     |  || ||||||||||||||   |||||||||||||||||||||||||||||||| |||    
T  18143579 tgtattatcaacctcagtaggcttcttacaattctttgcactagcaaaagaaaggttggaatt-ttctatctcaaactattaagcccaatagacttgaga 18143677  T
Q  183 cctagctttacactttgtatggtga 207  Q
     |||  || || |||||||||||||    
T  18143678 actaaattcacgctttgtatggtga 18143702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 20714164 - 20714072
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||||| ||| |||||||  | ||||||||||||||| |||| | |||||| |||||||||||||||||  |||||| ||||||||||    
T  20714164 cagaaacttctgactagcactataagatcttgatcacaccagatcagtctg-ttacac-ctgtattatcaacctcagcaggcttctacaattctt 20714072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 25037339 - 25037400
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtt 306  Q
    |||||||||||||| ||||||  ||||||||||||| ||||||||||| ||||||||||||||    
T  25037339 ttttacaaacacaatctcaaaaggatagagagacaa-taaatatagtgtgagcttatggagtt 25037400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 25051376 - 25051437
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtt 306  Q
    |||||||||||||| ||||||  ||||||||||||| ||||||||||| ||||||||||||||    
T  25051376 ttttacaaacacaatctcaaaaggatagagagacaa-taaatatagtgtgagcttatggagtt 25051437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 18883473 - 18883557
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagctt 329  Q
    |||||||||||| |||||||| |||||  || |||| ||||| |||||||||||||||||||||| || | ||||| |||||||||    
T  18883473 ttttacaaacacgaactcaaagagataatgatacaa-taaatctagtgagagcttatggagtttgattgtgtttgtggaagagctt 18883557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 18883281 - 18883433
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggctt-ttacaattcttga---tcacacaagaaaggttggaacaattcta 151  Q
    ||||||||||||||| ||| ||  ||| |||||||||||||||||||  |||||| |||||||||||     |  || ||||||||||||||   |||||    
T  18883281 ttgatcacaccagatcagttcg--taccctctgtattatcaacctcagcaggcttcttacaattctttgcactagcaaaagaaaggttggaatt-ttcta 18883377  T
Q  152 tctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 207  Q
    |||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  18883378 tctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 18883433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 15834044 - 15833953
Alignment:
Q  29 gaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||| ||| ||||||| || |||| || ||||||||||| || |||| | ||||||||||||| ||| |||| || ||||||||||    
T  15834044 gaaacttctgactagcactataagttcttgaccataccagataagttcg-ttactccctgtattatcaacatcagtaggtttctacaattctt 15833953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 25051173 - 25051307
Alignment:
Q  45 actataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggctt-ttacaattcttga---tcacacaagaaaggttg 140  Q
    |||||||| | ||||||||||||||| |||| |  ||  |||||||||||||||||||  |||||| |||||||||||     |  || |||||||||||    
T  25051173 actataatgtcttgatcacaccagatcagtctg--taacctctgtattatcaacctcagcaggcttcttacaattctttgcactagcaaaagaaaggttg 25051270  T
Q  141 gaacaattctatctcaaactattaagcccaatagactt 178  Q
    |||   ||||||||||||||||||||||||||| ||||    
T  25051271 gaatt-ttctatctcaaactattaagcccaatatactt 25051307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 18232917 - 18232841
Alignment:
Q  130 aagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 207  Q
    ||||||||||||||   ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  18232917 aagaaaggttggaatt-ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 18232841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 18242368 - 18242292
Alignment:
Q  130 aagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 207  Q
    ||||||||||||||   ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  18242368 aagaaaggttggaatt-ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 18242292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 18251819 - 18251743
Alignment:
Q  130 aagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 207  Q
    ||||||||||||||   ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  18251819 aagaaaggttggaatt-ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 18251743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 25037147 - 25037270
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggctt-ttacaattcttga---tcacacaagaaaggttggaacaattcta 151  Q
    ||||||||||||||| |||| |  ||  |||||||||||||||||||  |||||| |||||||||||     |  || ||||||||||||||   |||||    
T  25037147 ttgatcacaccagatcagtctg--taacctctgtattatcaacctcagcaggcttcttacaattctttgcactagcaaaagaaaggttggaatt-ttcta 25037243  T
Q  152 tctcaaactattaagcccaatagactt 178  Q
    |||||||||||||||||||||| ||||    
T  25037244 tctcaaactattaagcccaatatactt 25037270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 4843921 - 4843968
Alignment:
Q  130 aagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||||   |||||||||||||||||||| |||||||||||    
T  4843921 aagaaaggttggaatt-ttctatctcaaactattaaggccaatagactt 4843968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 12415161 - 12414990
Alignment:
Q  23 ttatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttg 122  Q
    ||||||||||||||| ||||| ||||||||  |||||||||||||||| |||||| |||||||||||||||| ||||  |  |||||| ||| |||||||    
T  12415161 ttatcagaaacttcttaatagcactataataagttgatcacaccagatcagtccg-ttacactctgtattattaaccatagcaggcttctacgattcttg 12415063  T
Q  123 atcacacaagaaaggttggaacaattctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 206  Q
    |||||||||||||         | |||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  12415062 atcacacaagaaa---------agttctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 12414990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 23884558 - 23884425
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  23884558 ttgatcacaccagatcagtccg--taaccactgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 23884461  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  23884460 tctcaaactattaagcccaatagacttgagatctag 23884425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 23895709 - 23895863
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||| | ||||||||||||||| |||||| |||||| |||||||||||||||||  |||||| |||||||| |||  |    
T  23895709 cagaaacttctgactagcactacaatatcttgatcacaccagatcagtccg-ttacac-ctgtattatcaacctcagcaggcttatacaattctttgcac 23895806  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  23895807 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 23895863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 22066331 - 22066226
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||    
T  22066331 ctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaacttttcctatctcaaactattaagcccaatagacttgag 22066232  T
Q  182 acctag 187  Q
    | ||||    
T  22066231 atctag 22066226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 10259872 - 10259946
Alignment:
Q  28 agaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaa 103  Q
    |||||||||||| ||| ||||||| || ||||||||||||||| |||||| |||||| ||||||||| ||||||||    
T  10259872 agaaacttctgactagcactataaattcttgatcacaccagatcagtccg-ttacaccctgtattataaacctcaa 10259946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 18420646 - 18420492
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt----- 121  Q
    ||||||||||||| ||| ||||  |  | ||||||||||||||| |||||| |||||| |||||||||||||||||  |||||| ||||||||||         
T  18420646 cagaaacttctgactagcactaacaaatcttgatcacaccagatcagtccg-ttacac-ctgtattatcaacctcagcaggcttatacaattctttgcac 18420549  T
Q  122 gatcacacaagaaaggttggaacaattctatct-caaactattaagcccaatagactt 178  Q
     ||  || ||||||||||||||   |||||||| ||||||||||||||||||||||||    
T  18420548 aatagcaaaagaaaggttggaa-ttttctatctccaaactattaagcccaatagactt 18420492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 23110311 - 23110404
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||||| ||| ||||||  || ||||||||||||||||||| | ||||||| |  |||||||||| |||| |||||| || |||||||    
T  23110311 cagaaacttctgactagcactatatgttcttgatcacaccagataagt-ctattacacccaatattatcaacatcaacaggcttctaaaattctt 23110404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 17512371 - 17512476
Alignment:
Q  86 ctgtattatcaacctcaataggcttttacaattcttgat---cacacaagaaaggttggaacaattc-tatctcaaactattaagcccaatagacttaag 181  Q
    ||||||||||||||| |  |||||| ||||||||||  |   | ||| ||||||||||||||  ||| ||||| ||||||||||||||||||||||| ||    
T  17512371 ctgtattatcaaccttagcaggcttctacaattctttgtttacgcacgagaaaggttggaacttttcctatctaaaactattaagcccaatagacttgag 17512470  T
Q  182 acctag 187  Q
    | ||||    
T  17512471 atctag 17512476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 14903 - 15002
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga 123  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  14903 tatcagaaacttctgaatagcactataatatgttgatcacaccagatcagtctg-ttacactctgtattatcaacctcagcaggcttctacgattcttga 15001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 94524 - 94678
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  94524 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 94621  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  94622 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 94678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 103965 - 104119
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  103965 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtccg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 104062  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  104063 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 104119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 27146 - 27289
Alignment:
Q  24 tatcagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggctt-ttacaattctt- 121  Q
    |||||||||||||| ||||  ||||||  || |||||||||| |||| | | || ||||||||||||||||||||||||  |||||| |||||||||||     
T  27146 tatcagaaacttcttaataacactatatgttcttgatcacactagatcaattcg-ttacactctgtattatcaacctcagcaggcttattacaattcttt 27244  T
Q  122 --gatcacacaagaaaggttggaacaa-ttctatctcaaactatt 163  Q
        || |||||||||||||||||||| |||| ||||||||||||    
T  27245 gctttcgcacaagaaaggttggaacaatttctctctcaaactatt 27289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 2175 - 2042
Alignment:
Q  56 ttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattcttga---tcacacaagaaaggttggaacaattc-ta 151  Q
    ||||||||||||||| ||||||  ||  | |||||||||||||||||  |||||| ||||||||||     || ||||||||||||||||||  ||| ||    
T  2175 ttgatcacaccagatcagtccg--taatccctgtattatcaacctcagcaggcttctacaattctttgctttcgcacaagaaaggttggaactcttccta 2078  T
Q  152 tctcaaactattaagcccaatagacttaagacctag 187  Q
    ||||||||||||||||| ||||||||| ||| ||||    
T  2077 tctcaaactattaagccaaatagacttgagatctag 2042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 10137 - 10045
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattctt 121  Q
    ||||||||||||| ||| |||||||  | | ||||||||||||| |||| | |||||| ||||||||||||||||||||||||| ||||||||||    
T  10137 cagaaacttctgactagcactataaggtctagatcacaccagatcagtctg-ttacac-ctgtattatcaacctcaataggcttctacaattctt 10045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 30916 - 31070
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||  |||| ||| | ||||||||||||||| |||| | | |||| |||||||||||||||||  |||||| |||||||| |||  |    
T  30916 cagaaacttctgactaacactacaatattttgatcacaccagatcagtcag-taacac-ctgtattatcaacctcagcaggcttatacaattctttgcac 31013  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  31014 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 31070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 3628 - 3474
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| |||| |  ||  |||||||||||||||||||  |||||| |||||||| |||  |    
T  3628 cagaaacttctgactagcactacaatttcttgatcacaccagatcagtctg--taacctctgtattatcaacctcagcaggcttatacaattctttgcac 3531  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  3530 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 3474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 256832 - 256748
Alignment:
Q  244 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagctt 329  Q
    ||||||||||||||||||||| |||||  || | || |||||||||||||||||||||||||||| ||   |||||||||||||||    
T  256832 ttttacaaacacaaactcaaagagataatgatataa-taaatatagtgagagcttatggagtttgattgcgtttgttgaagagctt 256748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 256948 - 256901
Alignment:
Q  130 aagaaaggttggaacaattctatctcaaactattaagcccaatagactt 178  Q
    ||||||||||||||   ||||||||||||||||| ||||||||||||||    
T  256948 aagaaaggttggaatt-ttctatctcaaactattcagcccaatagactt 256901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 408423 - 408269
Alignment:
Q  27 cagaaacttctgaatagaactataatttgttgatcacaccagataagtccgattacactctgtattatcaacctcaataggcttttacaattc-ttgatc 125  Q
    ||||||||||||| ||| |||| ||| | ||||||||||||||| |||||| | |||| ||||||||||||||||   |||||| |||||||| |||  |    
T  408423 cagaaacttctgactagcactacaatatcttgatcacaccagattagtccg-taacac-ctgtattatcaacctcttcaggcttatacaattctttgcac 408326  T
Q  126 a----cacaagaaaggttggaacaattctatctc-aaactattaagcccaatagactt 178  Q
    |    || ||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  408325 actagcaaaagaaaggttggaa-ttttctatctcaaaactattaagcccaatagactt 408269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 2410 - 2458
Alignment:
Q  149 ctatctcaaactattaagcccaatagacttaagacctagctttacacttt 198  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  2410 ctatctcaaactattaagcccaatagacttgagatctag-tttacacttt 2458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 42161 - 42197
Alignment:
Q  127 cacaagaaaggttggaacaattctatctcaaactatt 163  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  42161 cacaagaaaggtttgaacaattctttctcaaactatt 42197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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