View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10383_high_4 (Length: 247)
Name: NF10383_high_4
Description: NF10383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10383_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 29651954 - 29652076
Alignment:
| Q |
11 |
tacgtgtcattgtcaatcttgtgaatggtgtattttattttagaatgacaacaaaattcatctatgatagggtacttgtcttattctttaattggttaaa |
110 |
Q |
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| T |
29651954 |
tacgagtcattgtcaatcttgtgaatggtgtattttattttagaatgacaacaaaattcatctatgatatggtacttgtcttattctttacttggttaaa |
29652053 |
T |
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| Q |
111 |
ttttacaaggaaagggaggtgag |
133 |
Q |
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| T |
29652054 |
ttttacaaggaaagggaagtgag |
29652076 |
T |
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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 29652124 - 29652182
Alignment:
| Q |
181 |
caaattagagagaactacataatattttttgtcacccatattcattttgtatagcctat |
239 |
Q |
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| T |
29652124 |
caaattagagagaactacataatattttttgtcacccatattcattttgtatagcctat |
29652182 |
T |
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