View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10383_low_1 (Length: 556)
Name: NF10383_low_1
Description: NF10383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10383_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 87 - 538
Target Start/End: Original strand, 40034937 - 40035388
Alignment:
| Q |
87 |
cgtatcaatatgaattgttcttaggttgagtttctattttcttcttcaatttatgaaattagggtttatgaatttggtttcattgttcgttttctgattc |
186 |
Q |
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| T |
40034937 |
cgtatcaatatgaattgttcttaggttgagtttctattttcttcttcaatttatgaaattagggtttatgaatttggtttcattgttcgttttctgattc |
40035036 |
T |
|
| Q |
187 |
aattccagctattgttcaattatatctgctattgacaattcacgttgaacatagctataatcaaattatttctgctattgttagatttttcttctctagt |
286 |
Q |
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| T |
40035037 |
aattccagctattgttcaattatatctgctattgacaattcacgttgaacatagctataatcaaattatttctgctattgttagatttttcttctctagt |
40035136 |
T |
|
| Q |
287 |
ttatgctactgttcaattatttctggcctaggtttcgataatttgcttgtaattgcatacattcataattgattaaggagaaaaatatgatgatttgttt |
386 |
Q |
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| T |
40035137 |
ttatgctattgttcaattatttctggcctaggtttcgataatttgcttgtaattgcatacattcataattgattaaggagaaaaatatgatgatttgttt |
40035236 |
T |
|
| Q |
387 |
cgttgatcttgtgttgttttggtttcttatatccatgttataggaaagagaactacaattaaaattatgatagagtaattcatattattgctaggttaat |
486 |
Q |
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| T |
40035237 |
cgttgatcttgtgttgttttggtttcttatatccatgttataggaaagagaactacaattaaaattatgatagggtaattcatattattgctaggttaat |
40035336 |
T |
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| Q |
487 |
ttgctcattgtgattgtcaattattgaagattaggttaagccaagattttag |
538 |
Q |
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| T |
40035337 |
ttgctcattgtgattgtcaattattgaagattaggttaagccaagattttag |
40035388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 40225737 - 40225620
Alignment:
| Q |
87 |
cgtatcaatatgaattgttcttaggttgagtttctattttcttcttcaatttatgaaattagggtttatgaatttggtttcattgttcgttttctgattc |
186 |
Q |
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||||||||| |||||||||||||| ||| ||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
40225737 |
cgtatcaatttgaattgttcttagcttgcgtttccatttttttcttcaatttatgaaatcagggtttacgaatttggtttcattgttcgttttctgattc |
40225638 |
T |
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| Q |
187 |
aattccagctattgttca |
204 |
Q |
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|||| || |||||||||| |
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| T |
40225637 |
aatttcatctattgttca |
40225620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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