View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10383_low_10 (Length: 240)
Name: NF10383_low_10
Description: NF10383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10383_low_10 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 47198946 - 47198809
Alignment:
| Q |
106 |
aagctaaatggcaaggatctattataatccactaaagatccttttctaatttaaa-gattgcaaagtaatacttct---aactcacttatttcaatgtaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
47198946 |
aagctaaatggcaaggatctattataatctactaaagatccttttctaatttaaaagattgcaa-gtaatacttcttctaactcacttatttcaatgtaa |
47198848 |
T |
|
| Q |
202 |
ctttaaattcaatgcataaacctcctccagaaccaatgt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47198847 |
ctttaaattcaatgcataaacctcctccagaaccaatgt |
47198809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 47199000 - 47198939
Alignment:
| Q |
17 |
agtacaatcactgaatgtaatgaaaataattatgagcgtaaaagataaatgcttaaactaaa |
78 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
47199000 |
agtacaataactgaatgtaatgaaaataattatgagcgtaaaagataaatggttaagctaaa |
47198939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 47186309 - 47186270
Alignment:
| Q |
201 |
actttaaattcaatgcataaacctcctccagaaccaatgt |
240 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47186309 |
actttaaattcaatgcataaacctcttccagaaccaatgt |
47186270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University