View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10383_low_2 (Length: 521)
Name: NF10383_low_2
Description: NF10383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10383_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 511
Target Start/End: Complemental strand, 28790465 - 28789975
Alignment:
| Q |
15 |
aaaaatgcctttgttaaatttttatgctaagcaaatgattttgcatttgttataatatgcggttgtaccaatgcttgtcagcttgaatctacaaacaatc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | || |
|
|
| T |
28790465 |
aaaaatgcctttgttaaatttttatgctaagcaaatgattttgcatttgttataatatgcggttgtgccaatgctcgtcagcttgaatctacaaatagtc |
28790366 |
T |
|
| Q |
115 |
atggtgaactcttattgcagccttactgtcacttgcataatgcatatcaaatcatctacttagtttgcttattagttttagtttttagagtgttttcaaa |
214 |
Q |
| |
|
||| ||||||| || |||||||| |||||||||||||||||||||||| | | |||||||| |||||||||||||||||||| || || ||||||| |
|
|
| T |
28790365 |
atg---aactcttgtttcagccttatagtcacttgcataatgcatatcaaaactttgacttagttcgcttattagttttagtttttggactggtttcaaa |
28790269 |
T |
|
| Q |
215 |
agccatttcagtaaaattaatcaaaacttgtttcggtgagaattgtttatggatgatcacannnnnnnncctgtttgatttcaaacatcattgatgcaag |
314 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
28790268 |
agccatttcagtaaaattaataaaaacttgttttggtgagaattgtttatggatgatcacattttttt--ctgtttgatttcaactgtcagtgatgcaag |
28790171 |
T |
|
| Q |
315 |
cacatcatgtgttagtatttatgtactattgcctgaatattgtttctttagtcccatgcttttaatgttgtcgctgttcaatattgaaattgagttgtac |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
28790170 |
cacatcatgagttagtatttatgtactattgcttgaatattgtttctttagtcccatgcttttaatgttgtcgttgttcaatattaaaattgagttgtac |
28790071 |
T |
|
| Q |
415 |
aaaatatggattggtttacattttttaaaatatcatttaaggatgaccataatccttcatatcaaaaatattttcaagtctaggtatgtctttctca |
511 |
Q |
| |
|
||||||| |||||||||||||||| |||||| ||| |||||||| ||| ||||| ||||||| | | ||||||| |||||||||||||||||||||| |
|
|
| T |
28790070 |
aaaatatcgattggtttacattttctaaaatgtca-ttaaggattaccgtaatctttcatattacagatattttaaagtctaggtatgtctttctca |
28789975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 437
Target Start/End: Complemental strand, 28780770 - 28780707
Alignment:
| Q |
374 |
ttttaatgttgtcgctgttcaatattgaaattgagttgtacaaaatatggattggtttacattt |
437 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||||| ||||||||||||| | |||| ||||| |
|
|
| T |
28780770 |
ttttagtgttgtctctgttcaatattgatgttgagttctacaaaatatggacttgtttgcattt |
28780707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University