View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10383_low_5 (Length: 373)
Name: NF10383_low_5
Description: NF10383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10383_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 13273812 - 13274016
Alignment:
| Q |
24 |
ggtaggtaaatacttttaatatactttttaatttaggaaaactataggtaaacaatctcaatttagagaaagaaatgcccccttttataagcttattcca |
123 |
Q |
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| T |
13273812 |
ggtaggtgtatacttttaatatactttttaatttaggaaaactataggtaaacaatctcaatttagagaaagaaatgcccccttttataagcttattcca |
13273911 |
T |
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| Q |
124 |
aattccaaacatttcc-tttcaagtccaaattattttcgtttgtctcaaaaactttgggacccaaatcagaaaacccaaa--atggcaaaatcagaaaat |
220 |
Q |
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| T |
13273912 |
aattccaaacatttccttttcaagtccaaattattttcatttgtctcaaaaactttgggcttcaaatcagaaaacccaaaatatagcaaaatcagaaaat |
13274011 |
T |
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| Q |
221 |
ttgga |
225 |
Q |
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||||| |
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| T |
13274012 |
ttgga |
13274016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 13274079 - 13274196
Alignment:
| Q |
232 |
tatttttatgagtgtatcaacatactcttttacattatgaatatttcaaaataatccttgaaattgtaaaaagataatcgagttagttcctcattgcatt |
331 |
Q |
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| T |
13274079 |
tatttgtaggagtgtattaactcactcttttacattatgaatatttcaaaataatccttaaaattgtaaaaagataatcgagttagttcctcattgtatt |
13274178 |
T |
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| Q |
332 |
tacgacattacacactta |
349 |
Q |
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| T |
13274179 |
tacgatattacacactta |
13274196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 7878824 - 7878861
Alignment:
| Q |
265 |
attatgaatatttcaaaataatccttgaaattgtaaaa |
302 |
Q |
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| T |
7878824 |
attatgaatatattaaaataatccttgaaattgtaaaa |
7878861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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