View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10383_low_6 (Length: 303)
Name: NF10383_low_6
Description: NF10383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10383_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 34820634 - 34820361
Alignment:
| Q |
13 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34820634 |
agatgaagctaaaaataatagtagttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcag |
34820535 |
T |
|
| Q |
113 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34820534 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
34820435 |
T |
|
| Q |
213 |
ttgaggttgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagt |
286 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34820434 |
ttgaggttgaccatcagctcgcggaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagt |
34820361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 34820517 - 34820245
Alignment:
| Q |
13 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| | | |||| |||||| ||||| || |||||||||||| |||||||| ||||||||||| |
|
|
| T |
34820517 |
agatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcag |
34820418 |
T |
|
| Q |
113 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
212 |
Q |
| |
|
||||| || || ||||||||||||||| ||||||||| | ||||||||||||||||| ||| |||||||||| ||||||| |||||||||| |||| ||| |
|
|
| T |
34820417 |
ctcgcggaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaag |
34820318 |
T |
|
| Q |
213 |
ttgaggttgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacgagag |
285 |
Q |
| |
|
||| |||||||||||| ||||| || || |||||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
34820317 |
ttgtggttgaccatcaactcgcagacgacaaatcagacaaagctgaatataatagtagttttgttgacgagag |
34820245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 34820751 - 34820477
Alignment:
| Q |
13 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| || |||| |||| | |||||||| ||||||| |||||||| |||| || |||||||| |
|
|
| T |
34820751 |
agatgaagctgaaaataatagtagttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatcag |
34820652 |
T |
|
| Q |
113 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
212 |
Q |
| |
|
|| | ||| ||||| | |||||||||||||||||||| ||||||||||||||| ||| ||| |||| |||||| |||| || |||||||||||| ||| |
|
|
| T |
34820651 |
cttgtagatgacaacttagatgaagctaaaaataatagtagttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaag |
34820552 |
T |
|
| Q |
213 |
ttgaggttgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtg |
287 |
Q |
| |
|
||||| |||||||||||||||| || || ||||||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
34820551 |
ttgagcttgaccatcagctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtg |
34820477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 34820868 - 34820599
Alignment:
| Q |
13 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||| || |||| |||||| |||| | | |||||| |||||||||||| || |||||||| |
|
|
| T |
34820868 |
agatgaagctggaaataatagtagttttgttgacgagagtatcacaaaaaatgatgttggtaaggcaaaggtggctttggaagttgaagttaaccatcag |
34820769 |
T |
|
| Q |
113 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
212 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||| |||| ||| |
|
|
| T |
34820768 |
ctcgtagacgacaaattagatgaagctgaaaataatagtagttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaag |
34820669 |
T |
|
| Q |
213 |
ttgaggttgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacga |
282 |
Q |
| |
|
||||||| |||||||||| | || || || | |||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
34820668 |
ctgaggttaaccatcagcttgtagatgacaacttagatgaagctaaaaataatagtagttttgttgacga |
34820599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 34820400 - 34820176
Alignment:
| Q |
13 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
112 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||| || |||| |||| | |||||||| ||||||| ||||||||||| | |||||||||| |
|
|
| T |
34820400 |
agatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaa |
34820301 |
T |
|
| Q |
113 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
212 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||| |||||||||||||||||| ||| ||||||| |||||||||| ||| ||||| |||| ||| |
|
|
| T |
34820300 |
ctcgcagacgacaaatcagacaaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaag |
34820201 |
T |
|
| Q |
213 |
ttgaggttgaccatcagctcgctga |
237 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
34820200 |
ctgaggttgaccatcaactcgctga |
34820176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 286
Target Start/End: Complemental strand, 34820878 - 34820712
Alignment:
| Q |
120 |
acgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggt |
219 |
Q |
| |
|
||||||| | |||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||| || |||||| |||| ||||||| || |
|
|
| T |
34820878 |
acgacaagttagatgaagctggaaataatagtagttttgttgacgagagtatcacaaaaaatgatgttggtaaggcaaaggtggctttggaagttgaagt |
34820779 |
T |
|
| Q |
220 |
tgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagt |
286 |
Q |
| |
|
| |||||||||||| || || |||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34820778 |
taaccatcagctcgtagacgacaaattagatgaagctgaaaataatagtagttttgttgacgagagt |
34820712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 34819985 - 34819904
Alignment:
| Q |
152 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcg |
233 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| |||||| | | |||||||||| ||| | || |||||||||| |||| |
|
|
| T |
34819985 |
agttttgttgacgagagtatcaccaaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcg |
34819904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University