View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10385_high_1 (Length: 913)

Name: NF10385_high_1
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10385_high_1
NF10385_high_1
[»] chr4 (5 HSPs)
chr4 (303-790)||(161574-162036)
chr4 (16-305)||(162120-162409)
chr4 (88-305)||(102940-103157)
chr4 (786-888)||(161447-161549)
chr4 (371-491)||(102746-102867)
[»] chr7 (2 HSPs)
chr7 (97-304)||(13051841-13052048)
chr7 (380-466)||(13051643-13051729)
[»] scaffold0013 (2 HSPs)
scaffold0013 (91-304)||(93221-93434)
scaffold0013 (380-460)||(93578-93658)
[»] chr3 (2 HSPs)
chr3 (97-304)||(12138115-12138322)
chr3 (399-474)||(12138439-12138514)
[»] chr8 (4 HSPs)
chr8 (97-304)||(5670850-5671057)
chr8 (97-304)||(5692596-5692803)
chr8 (97-304)||(5722940-5723147)
chr8 (380-452)||(5693519-5693591)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 303 - 790
Target Start/End: Complemental strand, 162036 - 161574
Alignment:
Q  303 aaacaattatatttgcatgcatcatgttcaaaataggtaaataaatgtgtgttgaaatagactagaatgataacacctacctggtgacagtaaatgtaac 402  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  162036 aaacaaatatatatgcatgcatcatgttcaaaataggtaaataaatgtgtgttgaaatagactagaatgataacacctacctggtgacagtaaatgtaac 161937  T
Q  403 gaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaatacctacaagtaggaaattaatgtagacataaa 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  161936 gaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaaaacctacaagtaggaaattaatgtagacataaa 161837  T
Q  503 actcagtttaggcatactgtttacatagactaggtaaactcattaaaactctgtttacatctttcaacaaggagatctaatcactcttctccggtttgtt 602  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  161836 actcagtttaggcatactgtttacatagactaggtaaactcatt-aaactatgtttacatctttcaacaaggagatctaatcactcttctccggtttgtt 161738  T
Q  603 ctgtgtcttgggcaatttgttctgccagattcatgaatgaggaggcttctctgttgataattgttgcattaatggttatctctcaacatatgtaatgatt 702  Q
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  161737 ---------------------ctgccagattcatgaatgaggaggcttctctgttgataattgttgcattaatggttatctctcaacatatgtaatgatt 161659  T
Q  703 tattactccttctttcttcttctgaagtacatgagaaactagcattgatttactctactgatggtatgggttttatagacaaactatc 790  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  161658 tattactccttct---ttcttctgaagtacatgagaaactagcattgatttactctattgatggtatgggttttatagacaaactatc 161574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 162409 - 162120
Alignment:
Q  16 aaatagttcatgtattttcagacctcacataaattacacgagctatttaagatattagcctaaaaaataaataatggtagctaccgaaagccaagttttc 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  162409 aaatagtccatgtattttcagacctcacataaattacacgagctatttaagatattagcctaaaaaataaataatggtagctaccgaaagccaagttttc 162310  T
Q  116 ccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttcaccaagaa 215  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  162309 ccccatgaaggtatacgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttgacctccatcaggtccttctccaagaa 162210  T
Q  216 tccgcatacatatatagttgagtgcagtacaaaacatggtactgagaccctcaatttgtagcccccatccaccatcttcaatcttcaaaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  162209 tccgcatacatatatagttgagtgcagtacaaaacatggtactgtgaccctcaatttgtagcccccatccaccatcttcattcttcaaaa 162120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 88 - 305
Target Start/End: Complemental strand, 103157 - 102940
Alignment:
Q  88 aatggtagctaccgaaagccaagttttcccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtct 187  Q
    |||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  103157 aatggtaggtaccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtct 103058  T
Q  188 tgacctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacatggtactgagaccctcaatttgtagcccccatccac 287  Q
    ||||| |||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||||| |    
T  103057 tgaccgccatcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgtagcccccatcctc 102958  T
Q  288 catcttcaatcttcaaaa 305  Q
    |||||||| |||||||||    
T  102957 catcttcattcttcaaaa 102940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 786 - 888
Target Start/End: Complemental strand, 161549 - 161447
Alignment:
Q  786 ctatctaatgtgttgtgtggaggttggaactttgcttcatgccattcgagattgtattcatgctaatttgttgtttttatattcatgttgtctttttggg 885  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  161549 ctatctaatgtgttgtgtggaggttagaactttgcttcatgccattcgagactgtattcatgctaatttgttgtttttatattgatgttgtctttttggg 161450  T
Q  886 ttt 888  Q
    |||    
T  161449 ttt 161447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 371 - 491
Target Start/End: Complemental strand, 102867 - 102746
Alignment:
Q  371 gataacacctacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaat 470  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| ||||| |||||||| ||||||||     
T  102867 gatagcacatacttggtgacagtaaatgtaacgaagaatctctttgcgatgttctcgtgggaagacggaatcaagatgtccagtaatgtagacacagaaa 102768  T
Q  471 acctacaa-gtaggaaattaat 491  Q
    |||| ||| |||| ||||||||    
T  102767 acctgcaatgtagaaaattaat 102746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 97 - 304
Target Start/End: Complemental strand, 13052048 - 13051841
Alignment:
Q  97 taccgaaagccaagttttcccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttgacctcca 196  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  13052048 taccgaaagccaagtttttccccatgaaggtatatgcgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca 13051949  T
Q  197 tcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacatggtactgagaccctcaatttgtagcccccatccaccatcttcaa 296  Q
    || || ||||| |||||||| | ||  ||||||||||| |||||||||||||||||||| ||| |||||||||| ||||| ||||| || |||||||||     
T  13051948 tccggcccttctccaagaattctcaggcatatatagttcagtgcagtacaaaacatggtgctgtgaccctcaatgtgtagaccccaccctccatcttcat 13051849  T
Q  297 tcttcaaa 304  Q
    ||||||||    
T  13051848 tcttcaaa 13051841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 380 - 466
Target Start/End: Complemental strand, 13051729 - 13051643
Alignment:
Q  380 tacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacaca 466  Q
    |||||| ||||| || |||||| ||||||||||||||| ||||||||||||||||||  ||||||| ||||| |||||||| |||||    
T  13051729 tacctgatgacaatatatgtaatgaagaatctctttgcaatgctcttgtgggaataccaaatcaagatgtcccgtaatgtaaacaca 13051643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 91 - 304
Target Start/End: Original strand, 93221 - 93434
Alignment:
Q  91 ggtagctaccgaaagccaagttttcccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttga 190  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||| ||||    
T  93221 ggtacctaccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgaacacgaatccagtgtcttgctctagcacaagcattgttttga 93320  T
Q  191 cctccatcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacatggtactgagaccctcaatttgtagcccccatccaccat 290  Q
    || |||||||| ||||  |||||||||||||||||||| ||||||||||||||| |||||||| | ||| |||||||||| ||||||||||| || ||||    
T  93321 ccgccatcaggaccttgtccaagaatccgcatacatatgtagttgagtgcagtagaaaacatgatgctgtgaccctcaatgtgtagcccccaccctccat 93420  T
Q  291 cttcaatcttcaaa 304  Q
    ||||| ||| ||||    
T  93421 cttcattctgcaaa 93434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 380 - 460
Target Start/End: Original strand, 93578 - 93658
Alignment:
Q  380 tacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgta 460  Q
    |||||||||||| || |||||||||||||||||||| ||||| ||  ||||||||||||||||||| ||||| ||||||||    
T  93578 tacctggtgacaatatatgtaacgaagaatctctttacgatgttccggtgggaatacagaatcaagatgtccagtaatgta 93658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 97 - 304
Target Start/End: Original strand, 12138115 - 12138322
Alignment:
Q  97 taccgaaagccaagttttcccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttgacctcca 196  Q
    |||||||||||||||||| |||||||||||||| ||||| |||||||| |||||| ||||||| ||||| ||||| ||||||||||||||||||||||||    
T  12138115 taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttgctcttgcacaagcattgtcttgacctcca 12138214  T
Q  197 tcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacatggtactgagaccctcaatttgtagcccccatccaccatcttcaa 296  Q
    | ||| ||||| |||||||| |||||||||||||| |||||||  |||||||||||||||||  ||||||| || ||||  ||  | || |||||||||     
T  12138215 ttaggcccttctccaagaattcgcatacatatataattgagtgtggtacaaaacatggtactatgaccctctatgtgtaatccgaaccctccatcttcat 12138314  T
Q  297 tcttcaaa 304  Q
    ||||||||    
T  12138315 tcttcaaa 12138322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 399 - 474
Target Start/End: Original strand, 12138439 - 12138514
Alignment:
Q  399 taacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcctgtaatgtatacacagaatacct 474  Q
    |||||||||||||| || |||||||||| || ||||| ||||||||| |||||||||||||| | |||||| ||||    
T  12138439 taacgaagaatctccttacgatgctcttttgagaatatagaatcaagatgtcctgtaatgtacatacagaaaacct 12138514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 8e-42; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 97 - 304
Target Start/End: Original strand, 5670850 - 5671057
Alignment:
Q  97 taccgaaagccaagttttcccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttgacctcca 196  Q
    ||||||||||||| |||| |||||||||||||  | ||| |||||||| |||||| ||||||| ||||| ||| ||||||||||||| |||| |||||||    
T  5670850 taccgaaagccaaatttttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca 5670949  T
Q  197 tcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacatggtactgagaccctcaatttgtagcccccatccaccatcttcaa 296  Q
    |  || ||||| ||||| || ||||||||||| ||||||||| |||||||||||||| || || ||||||| |  ||||| |||||||| |||||||||     
T  5670950 tttggaccttctccaagtattcgcatacatatgtagttgagtacagtacaaaacatgatattgtgaccctctacgtgtagtccccatcctccatcttcat 5671049  T
Q  297 tcttcaaa 304  Q
    ||||||||    
T  5671050 tcttcaaa 5671057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 97 - 304
Target Start/End: Original strand, 5692596 - 5692803
Alignment:
Q  97 taccgaaagccaagttttcccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttgacctcca 196  Q
    |||||||||||||  ||| |||||||||||||  | ||| |||||||| |||||| ||||||| ||||| ||| ||||||||||||| |||| |||||||    
T  5692596 taccgaaagccaaaattttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca 5692695  T
Q  197 tcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacatggtactgagaccctcaatttgtagcccccatccaccatcttcaa 296  Q
    |  || ||||| ||||| || ||||| ||||| ||||||||| | |||||||||||| ||||| ||||||| |  ||||| |||||||| |||||||||     
T  5692696 tttggaccttctccaagtattcgcatgcatatgtagttgagtactgtacaaaacatgatactgtgaccctctacgtgtagtccccatcctccatcttcat 5692795  T
Q  297 tcttcaaa 304  Q
    ||||||||    
T  5692796 tcttcaaa 5692803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 97 - 304
Target Start/End: Original strand, 5722940 - 5723147
Alignment:
Q  97 taccgaaagccaagttttcccccatgaaggtatatgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttgacctcca 196  Q
    ||||||||||||  |||| ||||||||||  |  | ||| |||||||| |||||| ||||||| ||||| ||| ||||||||||||| |||| |||||||    
T  5722940 taccgaaagccagatttttccccatgaagacacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca 5723039  T
Q  197 tcaggtccttcaccaagaatccgcatacatatatagttgagtgcagtacaaaacatggtactgagaccctcaatttgtagcccccatccaccatcttcaa 296  Q
    |  || ||||| ||||| || ||||| ||||| ||||| ||| | |||||||||||| ||||| ||||||| |  ||||| |||||||| |||||||||     
T  5723040 tttggaccttctccaagtattcgcatgcatatgtagttaagtacggtacaaaacatgatactgtgaccctctacgtgtagtccccatcctccatcttcat 5723139  T
Q  297 tcttcaaa 304  Q
    ||||||||    
T  5723140 tcttcaaa 5723147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 380 - 452
Target Start/End: Original strand, 5693519 - 5693591
Alignment:
Q  380 tacctggtgacagtaaatgtaacgaagaatctctttgcgatgctcttgtgggaatacagaatcaaggtgtcct 452  Q
    |||||| ||||| || |||||||| ||||||||||| |||| |||||  |||||||| |||||||| ||||||    
T  5693519 tacctgatgacaatatatgtaacggagaatctctttccgatactctttggggaataccgaatcaagatgtcct 5693591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University