View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_high_11 (Length: 357)
Name: NF10385_high_11
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 26657211 - 26657536
Alignment:
| Q |
14 |
atgaaaaataaactttggttgggtattatgggaacatattgtaataattatcatattttcctcctcaagggttaattttatggacatttatgttttacct |
113 |
Q |
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| T |
26657211 |
atgaataataaactttggttgggtattatgggaacatattgtaataattgtcatattttcctcctcaagggttaattttatggacatttatattttacct |
26657310 |
T |
|
| Q |
114 |
ttaaggttgttttcatattctttcaataattgaattgtgcattgtaaatattcaccgcgtcactacaaatgatgtttctttatatcagttcaggtgcaag |
213 |
Q |
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| T |
26657311 |
ttaaggttgttttcatattctttcgataattgaattgtgcattgtaaatattcaccgcgtcactacaaatgatgtttctttatatcagttcaggtgcaag |
26657410 |
T |
|
| Q |
214 |
caaaagagtacctagataggaaaacaagagagcggcaaaagttggacttaccctacaaagaaaaacgatgtctagcaagcacttccttcagaaatggaat |
313 |
Q |
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| T |
26657411 |
caacagagtacctagataggaaaacaagagagcggcaaaagttggacttaccctacaaagaaaaacgatgtctagcaagcacttccttcagaaatggaat |
26657510 |
T |
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| Q |
314 |
caagagacagaatatgcgaaagttat |
339 |
Q |
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| T |
26657511 |
caagagacagaatatgcgaaagttat |
26657536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 32 - 339
Target Start/End: Original strand, 26643594 - 26643903
Alignment:
| Q |
32 |
ttgggtattatgggaacatattgtaataattatcatattttcctcctcaagggttaattttatggacatttatgttttacctttaaggttgt-tttcata |
130 |
Q |
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| T |
26643594 |
ttgggtattatgcggagatattgtactaattgtcatattttcctccttagtgactaactttatggacatttacattttatctttaaggttgactttcatt |
26643693 |
T |
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| Q |
131 |
ttctttcaataattgaatt-gtgcattgtaaatattcaccgcgtcactacaaatgatgtttctttatatcagttcaggtgcaagcaaaagagtacctaga |
229 |
Q |
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| T |
26643694 |
ttctatcaagaattgggtttgtgctttataaatattcattgcttaactacaaatgatgttttgatacatcagttcaagtgcaagcaacagagtacctaga |
26643793 |
T |
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| Q |
230 |
taggaaaacaagagagcggcaaaagttggacttaccctacaaagaaaaacgatgtctagcaagcacttccttcagaaatggaatcaagagacagaatatg |
329 |
Q |
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| T |
26643794 |
gaggaaaacaagagagcagcaaaagttggacttaccctacaaagaaaaacgatgtctagcaagcacttcattcagaaatggaattaagagacagaatatg |
26643893 |
T |
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| Q |
330 |
cgaaagttat |
339 |
Q |
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|||||||||| |
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| T |
26643894 |
cgaaagttat |
26643903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 7634061 - 7634110
Alignment:
| Q |
195 |
atatcagttcaggtgcaagcaaaagagtacctagataggaaaacaagaga |
244 |
Q |
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| T |
7634061 |
atatcagttcaagtgcaagcaacatagtacctagaaagaaaaacaagaga |
7634110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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