View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_high_12 (Length: 341)
Name: NF10385_high_12
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 2404576 - 2404330
Alignment:
| Q |
18 |
atcataattaagtatttttaaacattaaagaaagnnnnnnnnnntcaaactatgaaattgtttcaattaatttcactcttaaaattgccaagagttggac |
117 |
Q |
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| T |
2404576 |
atcataattaagtatttttaaacataaaagaaa-aaaaaaaaaatcaaactatgaaattgtttcaattaatttcactcttaaaattgccaagagttggac |
2404478 |
T |
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| Q |
118 |
atagtcaagcaactatttacaaccacaagaatacattagatttttctcaaactttttcaccttcacaagaatacccctttccaccataattcacaaccnn |
217 |
Q |
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| T |
2404477 |
atagtcaagcaactatttacaaccacaagaatacattagatttttctcaaactttttctccttcacaagaatacccctttccaccataattcacaacc-t |
2404379 |
T |
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| Q |
218 |
nnnnnnngatcaattaggacttcaaatattgtttccaacgcacccacct |
266 |
Q |
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| T |
2404378 |
tttttttgatcaattaggacttcaaatattgtttccaacgcacccacct |
2404330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 2404285 - 2404253
Alignment:
| Q |
309 |
accatcttctaatttcttattgttctaacctcc |
341 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2404285 |
accatcttctaatttcttattgttctaacctcc |
2404253 |
T |
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