View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_high_2 (Length: 617)
Name: NF10385_high_2
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 19 - 612
Target Start/End: Complemental strand, 43802692 - 43802099
Alignment:
| Q |
19 |
attgagcaacaacaagtttaactgtagttagtcccaagtttattccaggacatcctcttcgaccaaaaccaaatggtataaattggaaatcatgtccgcg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802692 |
attgagcaacaacaagtttaactgtagttagtcccaagtttattccaggacatcctcttcgaccaaaaccaaatggtataaattggaaatcatgtccgcg |
43802593 |
T |
|
| Q |
119 |
gtagtctaaacttttatccacgaatctctctggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattgcccataaattcaaaatt |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802592 |
gtagtctaaacttttatccacgaatctctccggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattgcccataaattcaaaatt |
43802493 |
T |
|
| Q |
219 |
attcttgnnnnnnnctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggtataatcttaaggtctcca |
318 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802492 |
attcttgtttttttctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggtataatcttaaggtctcca |
43802393 |
T |
|
| Q |
319 |
tgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaaccacgttatctagctcttgttggagatttttcat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802392 |
tgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttgttcgccccaaccacgttatctagctcttgttggagatttttcat |
43802293 |
T |
|
| Q |
419 |
cactcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatg |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802292 |
cactcttggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatg |
43802193 |
T |
|
| Q |
519 |
tttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtctacgaaatccctatgcttct |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
43802192 |
tttgttcgatcaacgacatgggttttttcgtcagagggatcgatcggttggtgcatcagtgagagtagaatgtctacgaagtccttatgcttct |
43802099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Complemental strand, 43813261 - 43812686
Alignment:
| Q |
19 |
attgagcaacaacaagtttaactgtagttagtcccaagtttattccaggacatcctcttcgaccaaaaccaaatggtataaattggaaatcatgtccgcg |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
43813261 |
attgagcaacaacaagtttaactgtagctagtcccaagtttattccaggacatcctcttcgaccgaaaccaaatggtataaattggaaatcatgtccacg |
43813162 |
T |
|
| Q |
119 |
gtagtctaaacttttatccacgaatctctctggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattgcccataaattcaaaatt |
218 |
Q |
| |
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|||||| || |||||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||| |||| |
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| T |
43813161 |
gtagtcgaagtttttatccacaaatctctctggataaaattcttcggcattattagaccatatcttagaatctcttcctattgcccacaaattcacaatt |
43813062 |
T |
|
| Q |
219 |
attcttgnnnnnnnctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggtataatcttaaggtctcca |
318 |
Q |
| |
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| ||||| |||||||||||||||||| ||||||| ||| | |||||||||||| |||||||||||||| | ||| ||||||||||||||||||| |
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| T |
43813061 |
actcttgtttttttctttatgaaataaccatgaactgtagcatcctctgttgactcgcgcggcacaagtggtcctgcaggatataatcttaaggtctcca |
43812962 |
T |
|
| Q |
319 |
tgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaaccacgttatctagctcttgttggagatttttcat |
418 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||||| || || |||||||| ||| |||||| || |||| ||||||||||||||||||||||| |
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| T |
43812961 |
tgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatcccaactacactatccagctcttgttggagatttttcat |
43812862 |
T |
|
| Q |
419 |
cactcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatg |
518 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||| || ||||||||||||| |
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| T |
43812861 |
tactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcgatcatgtctaaggctatagcctttatg |
43812762 |
T |
|
| Q |
519 |
tttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtcta |
594 |
Q |
| |
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||||||||||||| ||||||| ||| |||||||||| |||| |||| |||||| ||||||||||||||||||||| |
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| T |
43812761 |
tttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtcta |
43812686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 31890783 - 31890728
Alignment:
| Q |
60 |
attccaggacatcctcttcgaccaaaaccaaatggtataaattggaaatcatgtcc |
115 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| | ||| ||||||||||| |
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|
| T |
31890783 |
attccaggacaacttcttcgaccaaaaccaaatggtatgagttgaaaatcatgtcc |
31890728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
408 |
agatttttcatcactcttggatgcctcatgagctctgataaagcccactc |
457 |
Q |
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|||||||||||||||||||||||||| | || || |||||||||||||| |
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| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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