View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_high_24 (Length: 227)
Name: NF10385_high_24
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_high_24 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 22589277 - 22589389
Alignment:
| Q |
1 |
gacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaaatcaaatgctactgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22589277 |
gacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaaatcaaatgctactgaaa |
22589376 |
T |
|
| Q |
101 |
gacttcaaagata |
113 |
Q |
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||||||||||||| |
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| T |
22589377 |
gacttcaaagata |
22589389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 22589509 - 22589608
Alignment:
| Q |
128 |
ctaatagtgatagcaatatttagagaccactccataaaatctaactttagactaaacaagacattagttagcttggtttccattctacaatttaaaggaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22589509 |
ctaatagtgatagcaatatttagagaccactccataaaatctaactttagactaaacaagacattagttagcttggtttccattctacaatttaaaggaa |
22589608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 30936379 - 30936267
Alignment:
| Q |
1 |
gacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaaatcaaatgctactgaaa |
100 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30936379 |
gacaattatctataacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaaatcaaatgctactgaaa |
30936280 |
T |
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| Q |
101 |
gacttcaaagata |
113 |
Q |
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||||||||||||| |
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| T |
30936279 |
gacttcaaagata |
30936267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 30935556 - 30935457
Alignment:
| Q |
128 |
ctaatagtgatagcaatatttagagaccactccataaaatctaactttagactaaacaagacattagttagcttggtttccattctacaatttaaaggaa |
227 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30935556 |
ctaatagtgatagcaaaatttagagaccactccataaaatctaactttagactaaaaaagacattagttagcttggtttccattctacaatttaaaggaa |
30935457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 15437468 - 15437577
Alignment:
| Q |
1 |
gacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaaatcaaatgctactgaaa |
100 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15437468 |
gacaattacctataacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaaatcaaatgctactgaaa |
15437567 |
T |
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| Q |
101 |
gacttcaaag |
110 |
Q |
| |
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|| ||||||| |
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| T |
15437568 |
gatttcaaag |
15437577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 15528772 - 15528881
Alignment:
| Q |
1 |
gacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaaatcaaatgctactgaaa |
100 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15528772 |
gacaattacctataacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaaatcaaatgctactgaaa |
15528871 |
T |
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| Q |
101 |
gacttcaaag |
110 |
Q |
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|| ||||||| |
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| T |
15528872 |
gatttcaaag |
15528881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 8834571 - 8834617
Alignment:
| Q |
67 |
acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8834571 |
acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata |
8834617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 34548115 - 34548197
Alignment:
| Q |
145 |
atttagagaccactccataaaatctaactttagactaaacaagacattagttagcttggtttccattctacaatttaaaggaa |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34548115 |
atttagagaccactccataaaatctaactttagactaaaaaagacattagttaacttggtttccattctacaatttaaaggaa |
34548197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 4377019 - 4377065
Alignment:
| Q |
67 |
acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4377019 |
acagagtcaacactaaaatcaaatgctactgaaagatttcaaagata |
4377065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 7211 - 7165
Alignment:
| Q |
67 |
acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7211 |
acagagtcaacactaaaatcaaatgctactgaaagatttcaaagata |
7165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 20665 - 20619
Alignment:
| Q |
67 |
acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20665 |
acagagtcaacactaaaatcaaatgctactgaaagatttcaaagata |
20619 |
T |
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