View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10385_high_5 (Length: 483)
Name: NF10385_high_5
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 5411527 - 5411981
Alignment:
| Q |
19 |
gctatacaaatttggttctgaacatcgggtaattttgcttcaatgcaagaaaataagtaaacagtcccaagagacagtagtcaaatgtacttgtccaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5411527 |
gctatacaaatttggttctgaacatcgggtaattttgcttcaatgcaagaaaataagtaaacagtcccaagagacagtagtcaaatgtacttgtccaatg |
5411626 |
T |
|
| Q |
119 |
aaacacacaaatcttacaacaaaggttaggatcaaatggcttttctttgttctgatgcagcatttaaaatctatatggcccccacaaactttactagttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5411627 |
aaacacacaaatcttacaacaaaggttaggatcaaatggcttttctttgttctgatgcagcatttaaaatctatatggcccccacaaactttactagttg |
5411726 |
T |
|
| Q |
219 |
gattccatatttgtccatatggaattagaaagagacatttttgctattattctatctacttggacacatatggaatctgtgatttcagaaattttagtgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5411727 |
gattccatatttgtccatatggaattagaaagagacatttttgctattattctatctacttggacacatatggaatctgtgatttcagaaattttagtgt |
5411826 |
T |
|
| Q |
319 |
ctgctcttatgctataattttgcctctgctcctaagtttaagcaatataacatttaataagtatagaatgattattacctgaattgagtaacaaggtgat |
418 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5411827 |
ctgctcttatgttataattttgcctctgctcctaagtttaagcaatataacatttaataagtatagaatgattattacctgaattgagtaacaaggtgat |
5411926 |
T |
|
| Q |
419 |
gcagaaagatggaagcttccaaccttgccaagtcaagaccaggacacagcctttg |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5411927 |
gcagaaagatggaagcttccaaccttgccaagtcaagaccaggacacagcctttg |
5411981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University