View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10385_low_10 (Length: 402)

Name: NF10385_low_10
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10385_low_10
NF10385_low_10
[»] chr3 (1 HSPs)
chr3 (1-379)||(53148010-53148386)
[»] chr2 (1 HSPs)
chr2 (122-379)||(11734137-11734394)
[»] chr4 (4 HSPs)
chr4 (123-377)||(5530570-5530824)
chr4 (123-379)||(5936387-5936643)
chr4 (123-329)||(5922978-5923184)
chr4 (123-379)||(38178777-38179033)
[»] chr8 (2 HSPs)
chr8 (123-378)||(40919556-40919811)
chr8 (122-246)||(45319382-45319506)
[»] chr1 (1 HSPs)
chr1 (134-379)||(45454432-45454677)
[»] chr7 (1 HSPs)
chr7 (134-277)||(34839810-34839953)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 53148010 - 53148386
Alignment:
Q  1 gaacaatgaaattcaaaggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaacattcattaatctcaat 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  53148010 gaacaatgaaattcaacggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaacatt----aatctcaat 53148105  T
Q  101 tgagtgatgagaaacataaattt--accttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttc 198  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148106 tgagtgatgagaaacataaatttttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttc 53148205  T
Q  199 ggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148206 ggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactt 53148305  T
Q  299 tccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattg 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148306 tccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattg 53148386  T

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Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 122 - 379
Target Start/End: Original strand, 11734137 - 11734394
Alignment:
Q  122 ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||| |||||||    
T  11734137 ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaat 11734236  T
Q  222 tattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatc 321  Q
    |||| ||||||||||| || || ||||| |||||||||||||||||||||| ||| |||||||| ||||| |     |||||||||||||| ||||||||    
T  11734237 tattcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatc 11734336  T
Q  322 cataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattg 379  Q
    ||||||||| || |  ||||||||||||||||||   || ||||||||||| ||||||    
T  11734337 cataagaacagcgcgtggaacataccttccaccacttgcctcattgtaataaacattg 11734394  T

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Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 123 - 377
Target Start/End: Complemental strand, 5530824 - 5530570
Alignment:
Q  123 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 222  Q
    |||| |||||||||||||||||||| |||||||| | |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||| ||||| ||    
T  5530824 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5530725  T
Q  223 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 322  Q
    ||| |||||||||   || |||||||| |||||||| || | |||||||| |||  |||| ||||| | |||||| ||||||||||| ||||||||||||    
T  5530724 attcccagcaccactctgaccaaacacaaaattatccggtctaaagatctgaccatacggtccagaccggatactatccatagtacccggttcaagatcc 5530625  T
Q  323 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacat 377  Q
    |||||||| ||||| |||||| | |||||||||   |||||||||||||||||||    
T  5530624 ataagaaccgctctcggaacaaatcttccaccacttgcttcattgtaatacacat 5530570  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 123 - 379
Target Start/End: Original strand, 5936387 - 5936643
Alignment:
Q  123 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 222  Q
    |||| |||||||||||||  || || |||||||| | |||||||||||||||||| ||||| | |||||| ||||| || ||||| ||||| ||||| ||    
T  5936387 taccctgcaagcaatcactgttttcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagtt 5936486  T
Q  223 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 322  Q
    |||||||||||||   |||||||| || || ||||| || | |||||||| |||| |||| ||||| | || ||| ||||| || || ||||||||||||    
T  5936487 attaccagcaccactctgtccaaagacaaagttatccggtctaaagatctgaccgtacggtccagaccggacactgtccatcgttcccggttcaagatcc 5936586  T
Q  323 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattg 379  Q
    |||||||| |||||||||||  |||||||||||   |||||||||||||||||||||    
T  5936587 ataagaaccgctctaggaacgaaccttccaccacttgcttcattgtaatacacattg 5936643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 123 - 329
Target Start/End: Original strand, 5922978 - 5923184
Alignment:
Q  123 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 222  Q
    |||| |||||||||||||||||||| |||||||| | |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||| ||||| ||    
T  5922978 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5923077  T
Q  223 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 322  Q
    |||||||||||||   || |||||||| || ||||| || | |||||||| |||| |||| ||||| | || ||| |||||||| || ||||||||||||    
T  5923078 attaccagcaccactctgaccaaacacaaagttatccggtctaaagatctgaccgtacggtccagaccggacactgtccatagtccccggttcaagatcc 5923177  T
Q  323 ataagaa 329  Q
    |||||||    
T  5923178 ataagaa 5923184  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 123 - 379
Target Start/End: Original strand, 38178777 - 38179033
Alignment:
Q  123 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 222  Q
    |||||||||||||||| |||||||| || ||||| |  |||||||| | ||| || |||||||||||||| |||||||| ||||||||||| ||||||||    
T  38178777 taccttgcaagcaatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaatt 38178876  T
Q  223 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 322  Q
    ||| || ||||| || || || || ||||| ||||| || ||||||||||  || |||||||| || |  |     ||||| || |||||||||||||||    
T  38178877 atttccggcaccggactgaccgaaaacgaagttatccggtcgaaagatctggccaaacggaccggaacgaagcgaatccatggttccaggttcaagatcc 38178976  T
Q  323 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattg 379  Q
    ||||| || || |  ||||| || |||||||||  ||||||||||||||| ||||||    
T  38178977 ataagcacggcgcgtggaacgtatcttccaccaccagcttcattgtaatagacattg 38179033  T

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Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 123 - 378
Target Start/End: Original strand, 40919556 - 40919811
Alignment:
Q  123 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 222  Q
    ||||||||||||| || |||||||| |||||||| |||||||||||||||||||| ||||| |  ||||| ||||| || ||||| ||||| ||||||||    
T  40919556 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 40919655  T
Q  223 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 322  Q
    ||||||||| |||  |||||||||||| || |||||||| | ||| || || || || |||||||| |  | ||| ||||| ||||| |||||||| |||    
T  40919656 attaccagctccattttgtccaaacacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtcc 40919755  T
Q  323 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacatt 378  Q
    || ||||| |||||||||||||| |||||||||   ||||||||||| ||||||||    
T  40919756 attagaacagctctaggaacatatcttccaccacttgcttcattgtagtacacatt 40919811  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 45319506 - 45319382
Alignment:
Q  122 ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat 221  Q
    ||||||||||||||||||||||||||  | || || |  ||||||||||||||| ||||||| | ||| ||||| || || |||||||| |||||  |||    
T  45319506 ttaccttgcaagcaatcacaattctcaacctccttccttacaacatcaagaacaaagtcaatgagctcggcaccctcagtgtaatgacccttggcgaaat 45319407  T
Q  222 tattaccagcaccagattgtccaaa 246  Q
    | || || |||||||| ||||||||    
T  45319406 tgtttccggcaccagactgtccaaa 45319382  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 379
Target Start/End: Original strand, 45454432 - 45454677
Alignment:
Q  134 caatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcac 233  Q
    |||||||||||||| || || || |  ||||||||||| || || |||||||||||||| ||||| ||||| |||||||| ||||| || || || ||||    
T  45454432 caatcacaattctcagcctccttcctgacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcac 45454531  T
Q  234 cagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgc 333  Q
    | || |||||||| || || |||||||| || || |||| |||| | |||||||||||||  || |||||||| || || || |||||||| ||||| ||    
T  45454532 cggactgtccaaaaacaaagttatcaggccggaaaatctgaccgtatggaccagatctgacgctatccatagtccctggctccagatccatgagaacagc 45454631  T
Q  334 tctaggaacataccttccaccagaagcttcattgtaatacacattg 379  Q
    |||||||||  | ||||||| |   ||||| ||||| |||||||||    
T  45454632 tctaggaacgaatcttccacaactcgcttcgttgtagtacacattg 45454677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 277
Target Start/End: Complemental strand, 34839953 - 34839810
Alignment:
Q  134 caatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcac 233  Q
    ||||| |||||||| |||||||||||||||||||| ||||| || ||||| |  ||||| ||||| || ||||||||||| |||||||| ||||| || |    
T  34839953 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttaccggcgc 34839854  T
Q  234 cagattgtccaaacacgaaattatcaggacgaaagatcttaccg 277  Q
    | || || || || ||||| ||||||||||| ||||||| ||||    
T  34839853 cggactgaccgaaaacgaagttatcaggacggaagatctgaccg 34839810  T

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