View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_low_16 (Length: 334)
Name: NF10385_low_16
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 47884918 - 47885224
Alignment:
| Q |
17 |
acaacgaatgtctgacaaattaccttttcaaaggtaacaatttccacattgtacaaaccactgaatcccctgaagttgaattccccttgctcatcaagat |
116 |
Q |
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| T |
47884918 |
acaacgaatgtctgacaaattaccttttcaaaggtaacaatttccacattgtacaaaccactgaatcccctgaagttgaattccccttgctcatcaagat |
47885017 |
T |
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| Q |
117 |
gaccatgagtgtgagataaccactcttctttaagatcaatgaatcttctcccagcttcattgatttcaccttctgcattcaccaaatgtgcattgtcgcg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885018 |
gaccatgagtgtgagataaccactcttctttaagatcaatgaatcttctcccagcttcattgatttcaccttctgcattcaccaaatgtgcattgtcgcg |
47885117 |
T |
|
| Q |
217 |
gctcataaacaactcccaaaatccccatagcattacaccatcaacagcagggtgtgccatagcttcgcgcaacatcacttccaaatcatcacctcgaaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885118 |
gctcataaacaactcccaaaatccccatagcattacaccatcaacagcagggtgtgccatagcttcgcgcaacatcacttccaaatcatcacctcgaaca |
47885217 |
T |
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| Q |
317 |
tattcat |
323 |
Q |
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||||||| |
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| T |
47885218 |
tattcat |
47885224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 323
Target Start/End: Complemental strand, 4624108 - 4623865
Alignment:
| Q |
80 |
aatcccctgaagttgaattccccttgctcatcaagatgaccatgagtgtgagataaccactcttctttaagatcaatgaatcttctcccagcttcattga |
179 |
Q |
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||||| || |||||||||| ||||| |||| || |||||||||| | ||||||| |||||||| ||| | | | | || ||| | ||||||||||| | |
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| T |
4624108 |
aatcctctaaagttgaattgaccttgttcattaacatgaccatgactatgagatagccactcttgtttcaaagctagaaacctttttccagcttcattaa |
4624009 |
T |
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| Q |
180 |
tttcaccttctgcattcaccaaatgtgcattgtcgcggctcataaacaactcccaaaatccccatagcattacaccatcaacagcagggtgtgccatagc |
279 |
Q |
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| ||||||||||||||||||||||||||||| || | ||||||||||||||||| |||||||| | ||||| || |||||||||||||| ||||| || |
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| T |
4624008 |
tatcaccttctgcattcaccaaatgtgcattatccctactcataaacaactcccagaatccccacaacattatcccttcaacagcagggtgagccatggc |
4623909 |
T |
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| Q |
280 |
ttcgcgcaacatcacttccaaatcatcacctcgaacatattcat |
323 |
Q |
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||| | | ||| ||||| | ||||||||||| |||||||||| |
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| T |
4623908 |
ttccctaagcataacttcaagatcatcacctctcacatattcat |
4623865 |
T |
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