View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_low_19 (Length: 273)
Name: NF10385_low_19
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 1506120 - 1506376
Alignment:
| Q |
1 |
gtaatatccctatcattgataatgattattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1506120 |
gtaatatccctatcattgataatgattattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaa |
1506219 |
T |
|
| Q |
101 |
ttaccaagttgtcattgaacatttaaagtcaccatcaagattgtcctgtttgacggttgaagctgttcttttgataatggaatgcatcaaatactcgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1506220 |
ttaccaagttgtcattgaacatttaaagtcaccatcaagattgtcctgtttgacggttgaagctgttcttttgataatggaatgcatcaaatactcgaat |
1506319 |
T |
|
| Q |
201 |
tcccctattaaactcttaagttcgctaaagagaacggactgtttgtggacaaacatg |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1506320 |
tcccctattaaactcttaagttcgctaaagagaacggactgtttgtggacaaacatg |
1506376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 2947584 - 2947375
Alignment:
| Q |
26 |
ttattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaattaccaagttgtcattgaacattta |
125 |
Q |
| |
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||||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||| | |||||||| |
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| T |
2947584 |
ttattgtggtgaggaaatatataactacaaagaggagcttaagttgctgggagtgatagttgatttaagtggaaattaccaagttgttacacaacattta |
2947485 |
T |
|
| Q |
126 |
aagtcaccatcaagattgtcctgtttgacggttgaagctgttcttttgataatggaatgcatcaaatactcgaattcccctattaaactcttaagttcgc |
225 |
Q |
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|| ||||| |||| || ||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||| |
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| T |
2947484 |
aaatcaccctcaaatttagcctctttgacagctgaggctgttcttttgataatggaatgcatcaaatactcgaatgtccctattgaagtcttaaattcga |
2947385 |
T |
|
| Q |
226 |
taaagagaac |
235 |
Q |
| |
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|||||||||| |
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| T |
2947384 |
taaagagaac |
2947375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 3011811 - 3011996
Alignment:
| Q |
4 |
atatccctatcattgataatgattattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaatta |
103 |
Q |
| |
|
|||| ||| |||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||||||| |||||||||| |||||| | || |||||| |
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|
| T |
3011811 |
atattcctttcattgatcatgcttattttggtgaggaaatatataattacaaagaagagctcaagttgctaggagtgatagttgacttgaatggaaatta |
3011910 |
T |
|
| Q |
104 |
ccaagttgtcattgaacatttaaagtcaccatcaagattgtcctgtttgacggttgaagctgttcttttgataatggaatgcatca |
189 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||| ||| ||| |||||| | ||| |||||||||||||||||||| ||||||| |
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| T |
3011911 |
ccaagttgtcattgagcatttaaaaccactctcaaatttggcctctttgacagctgaggctgttcttttgataatggagtgcatca |
3011996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 2930959 - 2930774
Alignment:
| Q |
4 |
atatccctatcattgataatgattattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaatta |
103 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||||| || |||||| |
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| T |
2930959 |
atatccctttcattgatcgtgcttattttggtgaacaaatatataattacaaagaggagctcaagttgctaggagtgatagttgacttaactggaaatta |
2930860 |
T |
|
| Q |
104 |
ccaagttgtcattgaacatttaaagtcaccatcaagattgtcctgtttgacggttgaagctgttcttttgataatggaatgcatca |
189 |
Q |
| |
|
|||||| |||||||| ||||| ||||| || |||| ||| | | ||||| | ||| |||||||||||||||||||||||||||| |
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|
| T |
2930859 |
ccaagtcgtcattgagcatttgaagtcgccttcaaatttggcttcattgaccgctgaggctgttcttttgataatggaatgcatca |
2930774 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 2921560 - 2921474
Alignment:
| Q |
26 |
ttattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaattaccaagttgt |
112 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| || |||| || |||||||||| |||| |
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|
| T |
2921560 |
ttattatggtgaagaaatttataattacaaagaggagctcaagttgctaggagtgatagttggcttatctggaaattaccaaattgt |
2921474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37796463 - 37796244
Alignment:
| Q |
1 |
gtaatatccctatcattgataatgattattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaa |
100 |
Q |
| |
|
||||||||||| | |||||| | | ||| | ||||||||||||| ||| |||||||||||||| |||||| |||||||| ||| || ||| | | ||| |
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|
| T |
37796463 |
gtaatatcccttttattgatcaagcttactttggtgaggaaatatatagctacaaagaggagctgaagttgttgggagtggtagttggctttaatagaaa |
37796364 |
T |
|
| Q |
101 |
ttaccaagttgtcattgaacatttaaagtcaccatcaagattgtcctgtttgacggttgaagctgttcttttgataatggaatgcatcaaatactcgaat |
200 |
Q |
| |
|
||||||| |||| || | || ||| ||||| |||| ||| ||| |||||| | ||| |||||||||||||||||| |||||||||||| || | || |
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|
| T |
37796363 |
ttaccaaattgttatcaagcactta---tcaccctcaaatttggcctctttgacagctgaggctgttcttttgataatgcaatgcatcaaattcttggat |
37796267 |
T |
|
| Q |
201 |
tcccctattaaactcttaagttc |
223 |
Q |
| |
|
||||| |||| |||||||||| |
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| T |
37796266 |
gaccctagtaaaatcttaagttc |
37796244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 4915871 - 4916095
Alignment:
| Q |
4 |
atatccctatcattgataatgattattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaatta |
103 |
Q |
| |
|
|||| ||| |||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||| | |||||||||| |||||| | || |||||| |
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|
| T |
4915871 |
atatacctttcattgatcatgattatttcggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaatta |
4915970 |
T |
|
| Q |
104 |
ccaagttgtcattgaacatttaaagtcaccatcaagattgtcctgtttgacggttgaagctgttcttttgataatggaatgcatcaaatactcgaattcc |
203 |
Q |
| |
|
|||||||||||| || |||||||| || |||| ||| | | |||||||| ||| ||| |||||||||||||||||||||||||| | || ||| | |
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|
| T |
4915971 |
ccaagttgtcatagagcatttaaaactgccctcaaatttggcttctttgacggctgaggctattcttttgataatggaatgcatcaaacattcaaatgtc |
4916070 |
T |
|
| Q |
204 |
cctattaaactcttaagttcgctaa |
228 |
Q |
| |
|
|||||| || |||||| || ||||| |
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|
| T |
4916071 |
cctattgaagtcttaaatttgctaa |
4916095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 28025436 - 28025270
Alignment:
| Q |
26 |
ttattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaattaccaagttgtcattgaacattta |
125 |
Q |
| |
|
||||| ||| ||||||||| || | |||||||||||||| |||||| |||||||||||| || | |||||| |||||||||| |||| || || |||||| |
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|
| T |
28025436 |
ttattttggcgaggaaatatatgactacaaagaggagctgaagttgttgggagtgatagttggcataagtggaaattaccaaattgttatcgagcattta |
28025337 |
T |
|
| Q |
126 |
aagtcaccatcaagattgtcctgtttgacggttgaagctgttcttttgataatggaatgcatcaaat |
192 |
Q |
| |
|
|| ||||| ||| ||| ||| |||||| | ||| ||||||||| || | ||| |||||||||||| |
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|
| T |
28025336 |
aaatcaccctcatatttggcctctttgaccgctgaggctgttcttctgctgatgaaatgcatcaaat |
28025270 |
T |
|
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