View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_low_27 (Length: 227)
Name: NF10385_low_27
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_low_27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 36396991 - 36397200
Alignment:
| Q |
17 |
gtcttgaggacctaagttcatgtatattttttccctgtgggagaaaggcacgatgatacagcattggttaatttgttatgctttgttatacatatgcaat |
116 |
Q |
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| T |
36396991 |
gtcttgaggacctaagttcatgtatattttttccctgtgggagaaaggcacgatgatacagcattagttaatttgttatgctttgttatacatatgcaat |
36397090 |
T |
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| Q |
117 |
catgtaattataatggattttgtttgtgtttgttcatatgtagtgat-aaaagaacttgattgtttttgacattggcatggcatgtgtggagccgaagaa |
215 |
Q |
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| T |
36397091 |
catgtaattataatggatttcgtttgtgtttgttcatatgcagtgataaaaagaacttgattgtttttgacattggcatggca--tgtggagccgaagaa |
36397188 |
T |
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| Q |
216 |
aatatcagaaat |
227 |
Q |
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| T |
36397189 |
aatatcagaaat |
36397200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 8455256 - 8455143
Alignment:
| Q |
23 |
aggacctaagttcatgtatattttttccctgtgggagaaaggcacgatgatacagcattggttaatttgttatgctttgttatacatatgcaatcatgta |
122 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
8455256 |
aggacctaagttcatgtatattttttccctgtggaagaaaggcacgatgatacagcattagttaatttgttttgctttgttatacatatgcaatcatgta |
8455157 |
T |
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| Q |
123 |
attataatggattt |
136 |
Q |
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| T |
8455156 |
attataatggattt |
8455143 |
T |
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