View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_low_29 (Length: 224)
Name: NF10385_low_29
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 47885201 - 47885414
Alignment:
| Q |
1 |
aatcatcacctcgaacatattcattagtggaagacacatcaagctcggtaaaccaaattggctgaccaagagtagccaacttatcgagtgcagcacaaac |
100 |
Q |
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| T |
47885201 |
aatcatcacctcgaacatattcattagtggaagacacatcaagctcggtaaaccaaattggctgaccaagagtagccaacttatcgagtgcagcacaaac |
47885300 |
T |
|
| Q |
101 |
aataggccccacaggactatcaatgtgaccttgaattcctattcccccaaccggtgcaccttgatcttgcaaatcaagaatctgttgtgtgtatttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885301 |
aataggccccacaggactatcaatgtgaccttgaattcctattcccccaaccggtgcaccttgatcttgcaaatcaagaatctgttgtgtgtatttttct |
47885400 |
T |
|
| Q |
201 |
ggtgatgaattcat |
214 |
Q |
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|||||||||||||| |
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| T |
47885401 |
ggtgatgaattcat |
47885414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 4623887 - 4623703
Alignment:
| Q |
2 |
atcatcacctcgaacatattcattagtggaagacacatcaagctcggtaaaccaaattggctgaccaagagtagccaacttatcgagtgcagcacaaaca |
101 |
Q |
| |
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||||||||||| ||||||||||| | |||||||||||||| || |||||||| || || ||||||| || | || ||||| |||| || ||||||| |
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| T |
4623887 |
atcatcacctctcacatattcattcatagaagacacatcaagttctgtaaaccatatcggtaaaccaagaatacctaatttatcaagtgaagaacaaaca |
4623788 |
T |
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| Q |
102 |
ataggccccacaggactatcaatgtgaccttgaattcctattcccccaaccggtgcaccttgatcttgcaaatcaagaatctgtt |
186 |
Q |
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| T |
4623787 |
acaggcccaactggactatctatgtgtccttgaattccaattccaccaacaggtgcaccttgttcttgcaaatcaagaatgtgtt |
4623703 |
T |
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