View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10385_low_3 (Length: 612)
Name: NF10385_low_3
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 37028578 - 37027976
Alignment:
| Q |
1 |
caaggtggaagtgagtccaactagctgagtttgaaatattcgactttgcgatctggtctcgacaacatacatatttcaattgaatcttaattcgttatgt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
37028578 |
caagatggaagtgagtccaactagctgagtttgaaatattcgactttgcgttctggtctcgacaacatacatattttaattgaatcttaattcgccatgt |
37028479 |
T |
|
| Q |
101 |
tgtggcagtctaacatcttccgttagattttaactcttcttagttgtaaaataaaaaataacagttgaagnnnnnnnntattattgnnnnnnnna--aga |
198 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||| |
|
|
| T |
37028478 |
tgtggtagtctaacatcttccgttagattttaactcttcttagttgtaaaataaagaataacagttgaagaaaaaaaatattattgtttttttaagaaga |
37028379 |
T |
|
| Q |
199 |
agccaaaataatttatttattttttaagaaagatgccaaaattatattaaaccatgaagagatcca----aataag-cataagatattcctaagaatgac |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
37028378 |
agccaaaataatttatttattttttaagaaagaagccaaaattatattaaatcatgaagagatccatccaaataaggcataagatattcctaaggatgac |
37028279 |
T |
|
| Q |
294 |
tnnnnnnnnntatcatggttgatattttaatatatctatgatctatgttagtatatataccatccagtccaccacgtgtatgtgatatatataatattga |
393 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37028278 |
taaaaaaaaatatcatggttgatattttaatatatctatgatctatgttagtatatataccatccagtccaccacgtgtatgtgatatatataatattga |
37028179 |
T |
|
| Q |
394 |
caaaaaattcatcaaatgaaccgtctatccttagcctatgctatagattgagctagctagtgagattacaatgtttggcaaattacgtgcattttactca |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37028178 |
caaaaaattcatcaaatgaaccgtctatccttagcctatgctatagattgagctagctagtgagattacaatgtttggcaaattacgtgcattttactca |
37028079 |
T |
|
| Q |
494 |
gtgctggtttagtggaaagcacacatgaaatcgaatagttacgaaattagagtctatatacatagatgatggattcaataataagggcaaaggataaaaa |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37028078 |
gtgctggtttagtggaaagcacacatgaaatcgaatagttacgaaattagagtctatatacatagatgatggattcaataataagggcaaaggataaaaa |
37027979 |
T |
|
| Q |
594 |
agg |
596 |
Q |
| |
|
||| |
|
|
| T |
37027978 |
agg |
37027976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University