View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10385_low_30 (Length: 223)

Name: NF10385_low_30
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10385_low_30
NF10385_low_30
[»] chr1 (3 HSPs)
chr1 (16-209)||(22589972-22590165)
chr1 (84-205)||(7305313-7305434)
chr1 (58-198)||(3978921-3979061)
[»] chr2 (3 HSPs)
chr2 (16-209)||(30934908-30935101)
chr2 (84-205)||(1310160-1310281)
chr2 (119-167)||(23233304-23233352)
[»] chr3 (5 HSPs)
chr3 (74-205)||(37415924-37416055)
chr3 (57-190)||(55424465-55424598)
chr3 (57-190)||(31282120-31282253)
chr3 (59-149)||(13077572-13077662)
chr3 (111-199)||(52610182-52610270)
[»] chr4 (1 HSPs)
chr4 (57-190)||(28656700-28656833)
[»] chr5 (2 HSPs)
chr5 (96-205)||(11796879-11796989)
chr5 (112-204)||(11235977-11236069)
[»] chr7 (2 HSPs)
chr7 (58-198)||(19278709-19278849)
chr7 (59-194)||(38645388-38645522)
[»] chr8 (1 HSPs)
chr8 (112-204)||(23482847-23482939)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 22589972 - 22590165
Alignment:
Q  16 agagaataaggttatcagctttgtttatccaaatgaggtcaatggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  22589972 agagaataaggttatcagctttgtttatccaaatgaggtcaatggtggccggaaagtaagagagaaggtggtgatttgggtatttcaaactctcaccaat 22590071  T
Q  116 ctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggttgtcaaaggaggtcggacggagaagtagctg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22590072 ctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggttgtcaaaggaggtcggacggagaagtagctg 22590165  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 7305434 - 7305313
Alignment:
Q  84 tggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggttgtca 183  Q
    |||||||| || ||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||| || ||||||||| | |||||||||||| ||    
T  7305434 tggtgattggggtatttcaaattctcaccaatctaaaaataagttaatggttattgaataggaagaagagagaaatttaatgatggtggtggggttgcca 7305335  T
Q  184 aaggaggtcggacggagaagta 205  Q
    ||||||  ||||||||||||||    
T  7305334 aaggagtccggacggagaagta 7305313  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 3978921 - 3979061
Alignment:
Q  58 tggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtgg-ttattgaagaggaagaagaaagg 156  Q
    |||||||||||||||| |||||||| ||||| || || | ||| ||| ||| |||||||||| ||||| || |||| || ||||||||||||| || ||     
T  3978921 tggtggccggaaagtaggagagaaggtggtggttagggt-ttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagt 3979019  T
Q  157 aatttaatggttgtggtggggttgtcaaaggaggtcggacgg 198  Q
    | || |||||| ||||||| || || ||| || |||||||||    
T  3979020 agttcaatggtggtggtggtgtggtaaaacgacgtcggacgg 3979061  T

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Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 30935101 - 30934908
Alignment:
Q  16 agagaataaggttatcagctttgtttatccaaatgaggtcaatggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaat 115  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  30935101 agagaataaggttatcacttttgtttatccaaatgaggtcaatggtagccggaaagtaagagagaaggtggtgatttgggtatttcaaactctcaccaat 30935002  T
Q  116 ctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggttgtcaaaggaggtcggacggagaagtagctg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30935001 ctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggttgtcaaaggaggtcggacggagaagtagctg 30934908  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 1310160 - 1310281
Alignment:
Q  84 tggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggttgtca 183  Q
    |||||||| || ||||||||| |||||||||||||||||||| ||| |||||||| || |||||||||| || ||||||||| | |||||||||||| ||    
T  1310160 tggtgattggggtatttcaaattctcaccaatctaaaaataagttaatggttatttaataggaagaagagagaaatttaatgatggtggtggggttgcca 1310259  T
Q  184 aaggaggtcggacggagaagta 205  Q
    ||||||  ||||||||||||||    
T  1310260 aaggagtccggacggagaagta 1310281  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 23233304 - 23233352
Alignment:
Q  119 aaaataaattagtggttattgaagaggaagaagaaaggaatttaatggt 167  Q
    |||||||||  ||| || |||||||||||||||| ||||||||||||||    
T  23233304 aaaataaatgggtgatttttgaagaggaagaagagaggaatttaatggt 23233352  T

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Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 37415924 - 37416055
Alignment:
Q  74 agagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggt 173  Q
    ||||||||  |||||||| || ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||| |||||    
T  37415924 agagagaaagtggtgattggggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatggtggtggt 37416023  T
Q  174 ggggttgtcaaaggaggtcggacggagaagta 205  Q
    ||||||| |||||||| |||||||||||||||    
T  37416024 ggggttgccaaaggagttcggacggagaagta 37416055  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 55424598 - 55424465
Alignment:
Q  57 atggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaagg 156  Q
    |||||||||| ||| | |||| |||  |||||||| |  | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |    
T  55424598 atggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaatctaaaaataaattagtggttattgaagagggagaagagatg 55424499  T
Q  157 aatttaatggttgtggtggggttgtcaaaggagg 190  Q
    |||||  |||| || |||||||| ||||||||||    
T  55424498 aatttgttggtggttgtggggttttcaaaggagg 55424465  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 31282120 - 31282253
Alignment:
Q  57 atggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaagg 156  Q
    |||||||||| ||| | |||| |||  |||||||| |  | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |    
T  31282120 atggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaatctaaaaataaattagtggttattgaagagggagaagagatg 31282219  T
Q  157 aatttaatggttgtggtggggttgtcaaaggagg 190  Q
    |||| | || | |  |||||||| ||||||||||    
T  31282220 aattcattgatggctgtggggttttcaaaggagg 31282253  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 13077572 - 13077662
Alignment:
Q  59 ggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtgg-ttattgaagaggaaga 149  Q
    |||||||||||||||||||||||| ||||| || || | ||| ||| ||| |||||||||| ||||| || |||| || |||||||||||||    
T  13077572 ggtggccggaaagtaagagagaaggtggtggttagggt-ttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaaga 13077662  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 52610270 - 52610182
Alignment:
Q  111 ccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggttgtcaaaggaggtcggacgga 199  Q
    |||||||| |||||||||   || | ||| |||||||||||| ||||||| |||||| |||| |||| | | |||||||| ||||||||    
T  52610270 ccaatctataaataaattgagggcttttgtagaggaagaagagaggaattcaatggtggtggcggggattttaaaggaggccggacgga 52610182  T

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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 28656700 - 28656833
Alignment:
Q  57 atggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaagg 156  Q
    |||||||||| ||| | |||| |||  |||||||| |  | |||||||||||||||||||||||||||||||||||||||||||||||  |||||| | |    
T  28656700 atggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaatctaaaaataaattagtggttattgaagagagagaagagatg 28656799  T
Q  157 aatttaatggttgtggtggggttgtcaaaggagg 190  Q
    |||| | |||| || |||||||| ||||||||||    
T  28656800 aattcattggtggttgtggggttttcaaaggagg 28656833  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 11796879 - 11796989
Alignment:
Q  96 tatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgt-ggtggggttgtcaaaggaggtcgg 194  Q
    ||||||||| |||||||||| ||||||||| ||| |||||||| || |||||||||| |  ||||||||||| || |||||||||| ||||||||  |||    
T  11796879 tatttcaaattctcaccaatttaaaaataagttaatggttattaaaaaggaagaagagataaatttaatggtggtgggtggggttgccaaaggagtccgg 11796978  T
Q  195 acggagaagta 205  Q
    |||||||||||    
T  11796979 acggagaagta 11796989  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 11236069 - 11235977
Alignment:
Q  112 caatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggttgtcaaaggaggtcggacggagaagt 204  Q
    |||||||||||||||||   || | ||| |||| ||||||| ||||||| |||||| ||||||||| | | |||||||| |||||||| ||||    
T  11236069 caatctaaaaataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccggacggaaaagt 11235977  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 19278849 - 19278709
Alignment:
Q  58 tggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtgg-ttattgaagaggaagaagaaagg 156  Q
    ||||||||||||||||||||||||| ||||| || || | ||| ||| ||| |||||||||| ||||| || |||| || ||||||||||||| || ||     
T  19278849 tggtggccggaaagtaagagagaaggtggtggttagggt-ttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagt 19278751  T
Q  157 aatttaatggttgtggtggggttgtcaaaggaggtcggacgg 198  Q
    | || |||||| ||||||| || || ||| || |||||||||    
T  19278750 agttcaatggtggtggtggtgtggtaaaacgacgtcggacgg 19278709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 38645522 - 38645388
Alignment:
Q  59 ggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaa 158  Q
    |||||||| ||||||||||||||  ||||  || || | ||| ||||| ||||||||||| |||||||  ||||| | | ||||||||| | || | |      
T  38645522 ggtggccgaaaagtaagagagaatgtggtagttggggtttttgaaact-tcaccaatctagaaataaaagagtggctttggaagaggaaaacgagaaggt 38645424  T
Q  159 tttaatggttgtggtggggttgtcaaaggaggtcgg 194  Q
    |||| |||| |||||||||||| |||||||||||||    
T  38645423 tttattggtggtggtggggttgacaaaggaggtcgg 38645388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 23482847 - 23482939
Alignment:
Q  112 caatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggttgtcaaaggaggtcggacggagaagt 204  Q
    |||||||||||||||||   || | ||| |||| ||||||| ||||||| |||||| ||||||||| | | |||||||| | |||||| ||||    
T  23482847 caatctaaaaataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccagacggaaaagt 23482939  T

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