View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_low_6 (Length: 474)
Name: NF10385_low_6
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 463
Target Start/End: Complemental strand, 10483980 - 10483535
Alignment:
| Q |
16 |
acatcaatatctaaagcttttatttcatatatttatgcttctaaaactcatgcttgtccaaatgaatggacaagtaaatggatcatagaaaatttaaaag |
115 |
Q |
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| T |
10483980 |
acatcaatatctaaagcttttatttcatat--ttatgcttctaaaactcatacttgtccaaatgaatggacaagtaaatggatcatagaaaatttaaaag |
10483883 |
T |
|
| Q |
116 |
aagcaacatcgttataatggaaacatgaaaatagtgtcatctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10483882 |
aagcaacatcgttataatggaaacatgaaaatagtgtcatctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaattt |
10483783 |
T |
|
| Q |
216 |
cacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatttggcgaagatcaaaagtttcttctttaagtcttgcattttc |
315 |
Q |
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| T |
10483782 |
cacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccatttggcgaagatcaaaagtttcttccttaagtcttgcattctc |
10483683 |
T |
|
| Q |
316 |
ttgaacaactttgtcatgtgactcagacacatggtttagtttatcaacaaggttatgattttcagttctgagtctcaccacttgtgaccaaagttcatcc |
415 |
Q |
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| T |
10483682 |
ttgaacaactttgtcatgtgactcagacacatggtttagtttatcaacaaggttatgattttcagttctgagtctcaccacttgtgaccaaagttcatct |
10483583 |
T |
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| Q |
416 |
aagtgtttttgtttcctcatccttgatctcctagctgattctctattt |
463 |
Q |
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| T |
10483582 |
aagtgcttttgtttcctcatccttgatctcctagctgattctctattt |
10483535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 155 - 459
Target Start/End: Original strand, 4951832 - 4952133
Alignment:
| Q |
155 |
tctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
254 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4951832 |
tctcaatcatgaattttagaggaatca---tctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
4951928 |
T |
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| Q |
255 |
tttgcatgtcagctaccatttggcgaagatcaaaagtttcttctttaagtcttgcattttcttgaacaactttgtcatgtgactcagacacatggtttag |
354 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
4951929 |
tttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagtcgtgcattctcttgaacaactgtgtcatgtgactcagacacatggtttag |
4952028 |
T |
|
| Q |
355 |
tttatcaacaaggttatgattttcagttctgagtctcaccacttgtgaccaaagttcatccaagtgtttttgtttcctcatccttgatctcctagctgat |
454 |
Q |
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||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952029 |
tttgtcaacaaggttgtgattttcagttctgagtttcatcacttgtgaccaaagttcatccaagtgtttttgtttcctcatccttgatctcctagctgat |
4952128 |
T |
|
| Q |
455 |
tctct |
459 |
Q |
| |
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||||| |
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|
| T |
4952129 |
tctct |
4952133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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