View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_low_7 (Length: 445)
Name: NF10385_low_7
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_low_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 179 - 445
Target Start/End: Complemental strand, 46086747 - 46086481
Alignment:
| Q |
179 |
aggtgcaaattggatctcattcctttacgtatgattatgtgtatggtagcacgggacaaccttcatctacgatttacaatgattgtgtagcaccgctcgt |
278 |
Q |
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| T |
46086747 |
aggtgcaaattggatctcattcctttacgtatgattatgtgtatggtagcacgggacaaccttcatctactatttacgatgattgtgtagcaccgctcgt |
46086648 |
T |
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| Q |
279 |
tgatgcacttttcaatggatataatgccacggttctcgcttatggtcaggtataattttcatttcttggattttttgttatgtaagccttatgattacga |
378 |
Q |
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| T |
46086647 |
tgatgcacttttcaatggatataatgccacggttctcgcttatggtcaggtataattttcatttcttggattttttgttacgtaagccttatgattgcga |
46086548 |
T |
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| Q |
379 |
aaaacttatttgagaaacttatgctatatatttattcgacgtgtgaattgtaattgagcattttccc |
445 |
Q |
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| T |
46086547 |
aaaacttatttgagaaacttatgctatatatttattctacgtgtgaattgtaattgagcattttccc |
46086481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 46086906 - 46086822
Alignment:
| Q |
19 |
aacattcggcctctgatcacgtccgaacttctccttggttgcacagattgcatttctgttgttcctggcgaacctcaggtgctac |
103 |
Q |
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| T |
46086906 |
aacattcggcctctgatcacgtccgaacttctccttggttgcacagattgcatttctgttgttcctggcgaacctcaggtgctac |
46086822 |
T |
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