View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10385_low_8 (Length: 424)
Name: NF10385_low_8
Description: NF10385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10385_low_8 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 53538732 - 53538952
Alignment:
| Q |
12 |
agagagaagactaatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaaaa |
111 |
Q |
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| T |
53538732 |
agagaaaagactaatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggc-tgaaaagaaaa |
53538830 |
T |
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| Q |
112 |
aggaaagggatacagagattacaaaatttaataaactaaggatataatatcnnnnnnnttgaggtgtgagagtagcattaagatagcagcagaaacttta |
211 |
Q |
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| T |
53538831 |
aggaaaggggtacagggattacaaaatttaacaaactaaggatataatatc-aaaaaattgaggtgtgagaatagcattaagatagcagcagaaacttta |
53538929 |
T |
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| Q |
212 |
agttactaattctttgttaacaa |
234 |
Q |
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| T |
53538930 |
agttactaattctttgttaacaa |
53538952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 38508795 - 38508845
Alignment:
| Q |
228 |
ttaacaaagaatgcaccttacctttgcatttcaacagtaaattaaacttcc |
278 |
Q |
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| T |
38508795 |
ttaacaaagaatgcagattacctctgcatttcaacagtaaattaaacttcc |
38508845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 12807326 - 12807371
Alignment:
| Q |
357 |
aacaacatccttccactaacggatcaacaaatccatcaccttacaa |
402 |
Q |
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| T |
12807326 |
aacaacatccttccactaacatatcaacaaatccaacaacttacaa |
12807371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 7120075 - 7120174
Alignment:
| Q |
24 |
aatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaaaaaggaaagggata |
123 |
Q |
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| T |
7120075 |
aatgagtgagaggaaatgttaatgagagaccatgtatagaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaataaggaaagggata |
7120174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 7120341 - 7120391
Alignment:
| Q |
228 |
ttaacaaagaatgcaccttacctttgcatttcaacagtaaattaaacttcc |
278 |
Q |
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| T |
7120341 |
ttaacaaagaatgcacattacctttgcaattcaactgtaaattaaacttcc |
7120391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 8705 - 8753
Alignment:
| Q |
357 |
aacaacatccttccactaacggatcaacaaatccatcaccttacaacat |
405 |
Q |
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| T |
8705 |
aacaacatccttccactaacggatcaacaaatccatcaccttacaacat |
8753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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