View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_high_4 (Length: 405)
Name: NF10386_high_4
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 40 - 386
Target Start/End: Complemental strand, 31877880 - 31877535
Alignment:
| Q |
40 |
aagtcacgttaaaattttccttccttctcaaactgcagaagcctccctattccatacaatcatatgttaatgaagtacaggtttatacttttattgcata |
139 |
Q |
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| T |
31877880 |
aagtcacgttaaaattttccttccttctcaaactgcagaagcctccctattccatacaatcatatgttaataaagtacaggtttatacttttattgcata |
31877781 |
T |
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| Q |
140 |
tgctggaaattcctttttatacatgtacatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtc |
239 |
Q |
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| T |
31877780 |
tgctggaaattcctttttatacatgtacatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtc |
31877681 |
T |
|
| Q |
240 |
cttatttttccccatcattaatggattttggcagtgcaaattaatcactatcagtctattggttacagccctacaacagaagacgatattcactgtcgcg |
339 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31877680 |
ctta-ttttccccatcattaatggattttggcagtgcaaattaatcagtatcagtctattggttacagccctacaacagaagacgatattcactgtcgcg |
31877582 |
T |
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| Q |
340 |
aaactatcttcaacctatgtacaacttggacaatcacatattctcta |
386 |
Q |
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| T |
31877581 |
aaactatcttcaacctatgtacaacttggacaatcacatattctcta |
31877535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 166 - 386
Target Start/End: Original strand, 31560969 - 31561186
Alignment:
| Q |
166 |
acatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtcctta-----tttttccccatcattaa |
260 |
Q |
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| T |
31560969 |
acatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttttttttctccgtcattac |
31561068 |
T |
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| Q |
261 |
tggattttggcagtgcaaattaatcactatcagtctattggttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgta |
360 |
Q |
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| T |
31561069 |
tggattttggcagtgtcaattactcaatatcagt--------tacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgta |
31561160 |
T |
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| Q |
361 |
caacttggacaatcacatattctcta |
386 |
Q |
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| T |
31561161 |
caacttgaacaatcacatattctcta |
31561186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 363
Target Start/End: Original strand, 31558993 - 31559181
Alignment:
| Q |
167 |
catttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtccttatttttccccatcattaatggatt |
266 |
Q |
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| T |
31558993 |
catttttcattttatgtcaaatgtatctctgtagataattgaattggccttctattcttgaattatatttgtctttatttttccccatcattactggatt |
31559092 |
T |
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| Q |
267 |
ttggcagtgcaaattaatcactatcagtctattggttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgtacaa |
363 |
Q |
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| T |
31559093 |
ttggctgtgcaaattattaaatatca--------gttacagccctccaacagaagacaatattcactgtcgcggatctatcctcagcctatctacaa |
31559181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 31556020 - 31556173
Alignment:
| Q |
203 |
aattgaattggcattctattcttgaattatatttgtccttatttttccccatcattaatggattttggcagtgcaaattaatcactatcagtctattggt |
302 |
Q |
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| T |
31556020 |
aattgaattggcattctattcttgaattatatttgtctttattttt-cccatcattactggattttggcagtgcaaattaatcagtatca--------gt |
31556110 |
T |
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| Q |
303 |
tacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgtacaact |
365 |
Q |
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| T |
31556111 |
tacagccctccaactgaagacaatattcactgtcgcggatctattatcagcctatgtacaact |
31556173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 31559210 - 31559272
Alignment:
| Q |
328 |
ttcactgtcgcgaaactatcttcaacctatgtaca----acttggacaatcacatattctcta |
386 |
Q |
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| T |
31559210 |
ttcactgtcgcggatctatcttcaacctatgtacatacaacttggacaatcacatattctcta |
31559272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 31556200 - 31556261
Alignment:
| Q |
328 |
ttcactgtcgcgaaactatcttcaacctatgtaca----acttggacaatcacatattctct |
385 |
Q |
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| T |
31556200 |
ttcattgtcgcggatctatcttcaacctatgtacatacaacttggacaatcacatattctct |
31556261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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