View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_high_5 (Length: 392)
Name: NF10386_high_5
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 42913241 - 42913492
Alignment:
| Q |
19 |
catcacatcacccatacatttagctactggtagtaagtactatagctattttattacaccactaaacaagtaacaagaagaagacatt---caacaagac |
115 |
Q |
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| T |
42913241 |
catcacatcacccatacatttagctactagtagtaagtactatagctattttattacaccactaaacaagtaacaagaaaaagacattaaacaacaagac |
42913340 |
T |
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| Q |
116 |
ataatgaaacttaacttaaagtgattaatgtaattaaccactctctctaattaaacacttccataaacttcacacattttctccttattcactcttctca |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42913341 |
atagtgaaacttaacttaaagtgattaatgtaattaaccactctctctaattaaacacttccataaacttcacacattttctccttattcactcttctca |
42913440 |
T |
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| Q |
216 |
attggagcctcttcttcattcttctcaatttttgcatcattgttggtgatca |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42913441 |
attggagcctcttcttcattcttctcaatttttgcatcattgttggtgatca |
42913492 |
T |
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