View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_1 (Length: 629)
Name: NF10386_low_1
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 17 - 617
Target Start/End: Original strand, 40960525 - 40961125
Alignment:
| Q |
17 |
acatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtaccgcaaaaatgctagatgttttcgaaagcctcc |
116 |
Q |
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| T |
40960525 |
acatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtaccgcaaaaatgctagatgttttcgaaagcctcc |
40960624 |
T |
|
| Q |
117 |
tatgctgtttggtttttaactgatgcatatagcttcatgtaacttttgaaagattaatctggctgttgattccgtggttgtttactaaatatttggactc |
216 |
Q |
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| T |
40960625 |
tatgctgtttggtttttaactgatgcatatagcttcatgtaacttttgaaagattaatctggctgttgattccgtggttgtttactaaatatttggactc |
40960724 |
T |
|
| Q |
217 |
caggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatcttatgttacc |
316 |
Q |
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| T |
40960725 |
caggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatcttatgttacc |
40960824 |
T |
|
| Q |
317 |
tattaaattgtgtgaatattatcgactaactgttagcttttcttctgtgaaacagatgacagatgctagttgcaaactttgcacagagcgtaaagtgggt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960825 |
tattaaattgtgtgaatattatcgactaactgttagcttttcttctgtgaaacagatgacagatgctagttgcaaactttgcacagagcgtaaagtgggt |
40960924 |
T |
|
| Q |
417 |
gtaagggatattattcgcgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgatatttaattaaaatttaaaaactcatctaatgca |
516 |
Q |
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| T |
40960925 |
gtaagggatattattcgtgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgatatttaattaaaatttaaaaactcatctaatgca |
40961024 |
T |
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| Q |
517 |
cttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcattcttggtctgcttcttgtgatgcggtgtctgtgc |
616 |
Q |
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| T |
40961025 |
cttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcattcttggtctgcctcttgtgatgcggtgtctgtgc |
40961124 |
T |
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| Q |
617 |
t |
617 |
Q |
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| T |
40961125 |
t |
40961125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 185 - 617
Target Start/End: Original strand, 40947504 - 40947931
Alignment:
| Q |
185 |
attccgtggttgtttactaaatatttggactccaggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgcaggtcac |
284 |
Q |
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|||| |||||| |||||| ||||||| | ||||||| |||||||||||||||||| || ||||| ||||||||||||| | |||||||||||||||||| |
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| T |
40947504 |
attctgtggttatttactggatatttgaattccaggagggtttgactgctgaggaaatatccaaggatgagcccgatgagccacaacacatgcaggtcac |
40947603 |
T |
|
| Q |
285 |
tttttgctccactccaataatcttatgttacctattaaattgtgtgaatattatcgactaactgttagcttttcttct-gtgaaacagatgacagatgct |
383 |
Q |
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| T |
40947604 |
tttttgctccatcccaacaattttatgttatctgttaaattgtgtgaatattatttactgaatgttggcttttctactggtgaaacagatgacagatgct |
40947703 |
T |
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| Q |
384 |
agttgcaaactttgcacagagcgtaaagtgggtgtaagggatattattcgcgcaggacttgctgaccgatatatggtttgcaccttaatgctttactgat |
483 |
Q |
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| T |
40947704 |
cgctgcaaaatttgcgatgagcaaaaagttggcgtgagggatattatccgtgcaggatatgctgaccgatatatggtcagcgccttaatgctttactgat |
40947803 |
T |
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| Q |
484 |
atttaattaaaatttaaaaactcatctaatgcacttttaatgacccgggttttgattgttgctctgcttgttcagctggaatgtatcgcctgtggtcatt |
583 |
Q |
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| T |
40947804 |
atttca--aatat---caaattcatctcctgtagtttttgtgacttcgg-tttaatttttgctctgcttgttcagctggaatgcatagcttgtggtcatt |
40947897 |
T |
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| Q |
584 |
cttggtctgcttcttgtgatgcggtgtctgtgct |
617 |
Q |
| |
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| |||||||| ||| ||||||||||||||||||| |
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| T |
40947898 |
cctggtctgcctctcgtgatgcggtgtctgtgct |
40947931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 2663057 - 2662996
Alignment:
| Q |
217 |
caggaaggtttgactgctgaggaattacccaagaatgagcccgatgaacaacaacacatgca |
278 |
Q |
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| T |
2663057 |
caggagggtttgactgctgaggaaaaaaccaagaaggagcctgatgagaaacaacacatgca |
2662996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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