View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10386_low_10 (Length: 315)

Name: NF10386_low_10
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10386_low_10
NF10386_low_10
[»] chr3 (2 HSPs)
chr3 (32-299)||(33367600-33367862)
chr3 (17-88)||(33813577-33813648)
[»] chr4 (9 HSPs)
chr4 (32-299)||(31523638-31523900)
chr4 (13-147)||(54568412-54568546)
chr4 (17-129)||(22209231-22209343)
chr4 (17-149)||(53745287-53745419)
chr4 (17-149)||(22206135-22206268)
chr4 (47-148)||(26626129-26626230)
chr4 (42-101)||(8649653-8649712)
chr4 (42-101)||(8661460-8661519)
chr4 (17-88)||(23137517-23137588)
[»] chr1 (5 HSPs)
chr1 (36-299)||(49193600-49193858)
chr1 (56-146)||(39333049-39333139)
chr1 (47-148)||(17288023-17288124)
chr1 (13-69)||(45237661-45237717)
chr1 (17-88)||(19039262-19039333)
[»] chr8 (3 HSPs)
chr8 (13-147)||(8813450-8813584)
chr8 (17-101)||(44071388-44071471)
chr8 (13-78)||(16468571-16468636)
[»] chr5 (4 HSPs)
chr5 (13-147)||(12873953-12874087)
chr5 (57-149)||(14988498-14988590)
chr5 (17-87)||(16056592-16056662)
chr5 (16-57)||(11465280-11465321)
[»] chr7 (3 HSPs)
chr7 (13-146)||(37446804-37446937)
chr7 (14-73)||(25839361-25839420)
chr7 (17-61)||(4656262-4656306)
[»] chr6 (6 HSPs)
chr6 (14-147)||(27771102-27771234)
chr6 (17-149)||(24845670-24845802)
chr6 (33-140)||(23389228-23389335)
chr6 (13-73)||(27118798-27118858)
chr6 (16-94)||(24691742-24691820)
chr6 (17-149)||(8497727-8497860)
[»] scaffold0001 (1 HSPs)
scaffold0001 (21-146)||(414412-414537)
[»] chr2 (3 HSPs)
chr2 (13-149)||(9362075-9362211)
chr2 (47-148)||(28495494-28495595)
chr2 (21-147)||(5076837-5076964)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 32 - 299
Target Start/End: Complemental strand, 33367862 - 33367600
Alignment:
Q  32 aagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggta 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  33367862 aagtcacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaacaaaatgagatggta 33367763  T
Q  132 gtatacataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatat 231  Q
    | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33367762 gcatacataagaaaaaagactcggcatgttaataagcatgttgatacaaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatat 33367663  T
Q  232 aagcctgtcgaccaaataccctaccctaagtacagagtacataactgaactgcaccttacactaagtg 299  Q
    |||| ||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||    
T  33367662 aagcatgtcgaccaaatac-----cctaagtacagagtacataactgaactgcaccttacactaagtg 33367600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 33813577 - 33813648
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaat 88  Q
    ||||||||| ||||| | || |||  ||||||||||||||||||| |||||||||||||| |||||||||||    
T  33813577 agaagttaatcgaatcaatcgcaatcatgtaaacatatatagttattagaagttttataacaatttaaaaat 33813648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 32 - 299
Target Start/End: Original strand, 31523638 - 31523900
Alignment:
Q  32 aagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggta 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  31523638 aagtcacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaataaaatgagatggta 31523737  T
Q  132 gtatacataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatat 231  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523738 acatacataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatat 31523837  T
Q  232 aagcctgtcgaccaaataccctaccctaagtacagagtacataactgaactgcaccttacactaagtg 299  Q
    ||||||||||||||||||||| |     ||||||||||||||| ||||||||||||||||||||||||    
T  31523838 aagcctgtcgaccaaatacccca-----agtacagagtacatatctgaactgcaccttacactaagtg 31523900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 54568412 - 54568546
Alignment:
Q  13 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaata 112  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| ||||||| |||||| ||| |||||    
T  54568412 gagaagaagttaaacgaataagtcacaacactgtaaacatatatagttaatagaagttttaacaaaatttaaaaacatgttcccttctacgacaacaata 54568511  T
Q  113 gcaacaaaatgagatggtagtatacataagaaaaa 147  Q
    |||||||||||| ||||||| |||||||| |||||    
T  54568512 gcaacaaaatgaaatggtagcatacataaaaaaaa 54568546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 22209343 - 22209231
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaa 116  Q
    ||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||  ||| |||||||||    
T  22209343 agaagttaatcgaatcagtcgcaaaaatgtaaacatatatagttaatagaagttttataacaatttaaaaatatgttcccttctaagacaacaatagcaa 22209244  T
Q  117 caaaatgagatgg 129  Q
    |||||||| ||||    
T  22209243 caaaatgaaatgg 22209231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 53745287 - 53745419
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaa 116  Q
    ||||||||| | ||| |||| ||  |||||||| ||||||||||||||||| ||||| || |||||||||||||||||| |||||  ||| |||||| ||    
T  53745287 agaagttaatcaaatcagtcgcattaatgtaaatatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaa 53745386  T
Q  117 caaaatgagatggtagtatacataagaaaaagg 149  Q
    |||||| | ||||||| |||||||| |||||||    
T  53745387 caaaattaaatggtagcatacataacaaaaagg 53745419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 22206268 - 22206135
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaattt-aaaaatatgttcctttctactacatcaatagca 115  Q
    |||| |||| ||||| | || ||| ||||||||||||||||||| |||||||||| |||  | ||| ||||||||||||  ||||| |||  ||||||||    
T  22206268 agaaattaatcgaatcaatcgcaataatgtaaacatatatagttgatagaagtttcatatcagttttaaaaatatgttcacttctaatactacaatagca 22206169  T
Q  116 acaaaatgagatggtagtatacataagaaaaagg 149  Q
    ||||||||| ||||||| |||||||| |||||||    
T  22206168 acaaaatgaaatggtagcatacataacaaaaagg 22206135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 26626129 - 26626230
Alignment:
Q  47 aaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 146  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||| | |||  ||| ||||| || |||||||| ||||||| |||||||| ||||    
T  26626129 aaacatattcagttaatagaagttttatagcaatttaaaaatatgttccctcctaagacaacaataacagcaaaatgaaatggtagcatacataacaaaa 26626228  T
Q  147 ag 148  Q
    ||    
T  26626229 ag 26626230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 8649653 - 8649712
Alignment:
Q  42 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttcta 101  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||    
T  8649653 aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttcta 8649712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 8661460 - 8661519
Alignment:
Q  42 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttcta 101  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||    
T  8661460 aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttcta 8661519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 23137517 - 23137588
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaat 88  Q
    ||||||||| ||||| | || ||| |||||||| |||||||||||||||||||||||||| |||||||||||    
T  23137517 agaagttaatcgaattaatcgcaataatgtaaatatatatagttaatagaagttttataacaatttaaaaat 23137588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 36 - 299
Target Start/End: Original strand, 49193600 - 49193858
Alignment:
Q  36 cacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtat 135  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||    
T  49193600 cacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaataagttcccttctactacaacaatagcaacaaaatgagatggtagcat 49193699  T
Q  136 acataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatataagc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49193700 acataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatataaga 49193799  T
Q  236 ctgtcgaccaaataccctaccctaagtacagagtacataactgaactgcaccttacactaagtg 299  Q
     |||||||||||||||| |     |||||| |||||||||||||||||||||||||||||||||    
T  49193800 atgtcgaccaaatacccaa-----agtacaaagtacataactgaactgcaccttacactaagtg 49193858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 39333049 - 39333139
Alignment:
Q  56 tagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 146  Q
    ||||| ||||||||||||||  |||||||||||||||||| |||||  ||| |||||||| |||||||| ||||||| |||||||| ||||    
T  39333049 tagttgatagaagttttatagcaatttaaaaatatgttcccttctaagacaacaatagcagcaaaatgaaatggtagcatacataacaaaa 39333139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 17288124 - 17288023
Alignment:
Q  47 aaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 146  Q
    ||||| || ||||||||||||||||||||  |||||||||||||||||| | |||  ||| |||||||| |||||||| ||||||| ||| |||| ||||    
T  17288124 aaacagatttagttaatagaagttttatagcaatttaaaaatatgttccctcctaagacaacaatagcagcaaaatgaaatggtagcatatataacaaaa 17288025  T
Q  147 ag 148  Q
    ||    
T  17288024 ag 17288023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 45237717 - 45237661
Alignment:
Q  13 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagt 69  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||    
T  45237717 gagaagaagttaaacgaataagtcgcaataatgtaaatatatatagtaaatagaagt 45237661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 19039262 - 19039333
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaat 88  Q
    |||| |||| ||||| | || ||| |||||||||||||||| |||||||||||||||||| |||| ||||||    
T  19039262 agaaattaatcgaatcaatcgcaataatgtaaacatatatatttaatagaagttttataacaattaaaaaat 19039333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 8813584 - 8813450
Alignment:
Q  13 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaata 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||| ||| |||||    
T  8813584 gagaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagttttaacaaaatttaaaaatatgttcccttctacgacaacaata 8813485  T
Q  113 gcaacaaaatgagatggtagtatacataagaaaaa 147  Q
    |||||||| ||| ||||||| |||||||| |||||    
T  8813484 gcaacaaattgaaatggtagcatacataaaaaaaa 8813450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 44071388 - 44071471
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttcta 101  Q
    ||||||||| |||||  ||| ||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||    
T  44071388 agaagttaatcgaattggtcgcaaaaatgtaaacatatataattaatagaagttttataacaattt-aaaatatgttcccttcta 44071471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 16468571 - 16468636
Alignment:
Q  13 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaa 78  Q
    |||||||| ||||||||||||||  ||| |||||||| |||||||||||||||||||  |||||||    
T  16468571 gagaagaatttaaacgaataagttgcaataatgtaaatatatatagttaatagaagtcatataaaa 16468636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 12874087 - 12873953
Alignment:
Q  13 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaata 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||| |||||    
T  12874087 gagaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaata 12873988  T
Q  113 gcaacaaaatgagatggtagtatacataagaaaaa 147  Q
    |||||||||||||||| || ||||| | |||||||    
T  12873987 gcaacaaaatgagatgataatatacctcagaaaaa 12873953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 14988590 - 14988498
Alignment:
Q  57 agttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaaagg 149  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||  ||| ||||||||||||||||| | ||||| |||||||| |||||||    
T  14988590 agttaatggaagttttataacaatttaaaaatatgttcccttctaagacaacaatagcaacaaaatgaaaaggtagcatacataacaaaaagg 14988498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 16056592 - 16056662
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaa 87  Q
    ||||||||| ||||| | || ||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  16056592 agaagttaatcgaatcaatcgcaataatgtaaatatatatagttaatagaagttttataacaatttaaaaa 16056662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 11465280 - 11465321
Alignment:
Q  16 aagaagttaaacgaataagtcacaacaatgtaaacatatata 57  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||    
T  11465280 aagaaattaaacgaataagtcgcaataatgtaaacatatata 11465321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 37446804 - 37446937
Alignment:
Q  13 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaata 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||| |||||| ||| |||||    
T  37446804 gagaagaagttaaacgaataagtcgcaacaatgtaaacatatatcgttaatagaagttttaacaaattttaaaaatatgttcccttctacgacaacaata 37446903  T
Q  113 gcaacaaaatgagatggtagtatacataagaaaa 146  Q
    |||||||||||  ||||||| |||||||| ||||    
T  37446904 gcaacaaaatggaatggtagcatacataaaaaaa 37446937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 25839361 - 25839420
Alignment:
Q  14 agaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagtttta 73  Q
    |||||||||||||  |||||||| ||| ||||||||||||||||||| ||||||||||||    
T  25839361 agaagaagttaaataaataagtcgcaataatgtaaacatatatagttgatagaagtttta 25839420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 4656262 - 4656306
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagtta 61  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||    
T  4656262 agaagttaaacgaataattcgcaacaatttaaacatatatagtta 4656306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 27771234 - 27771102
Alignment:
Q  14 agaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatag 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| |||||| ||| ||||||    
T  27771234 agaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagattt-aaaatatgttcccttctacgacaacaatag 27771136  T
Q  114 caacaaaatgagatggtagtatacataagaaaaa 147  Q
    ||||||||||||||| || ||||| | |||||||    
T  27771135 caacaaaatgagatgataatatacctcagaaaaa 27771102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 24845670 - 24845802
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaa 116  Q
    ||||||||| ||||| |||| ||  |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||  ||| ||| || ||    
T  24845670 agaagttaatcgaatcagtcgcattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaaaaggaa 24845769  T
Q  117 caaaatgagatggtagtatacataagaaaaagg 149  Q
    |||||| | ||||||| |||||||| |||||||    
T  24845770 caaaattaaatggtagcatacataacaaaaagg 24845802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 23389335 - 23389228
Alignment:
Q  33 agtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtag 132  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||  ||| |||||| |||||||||| |||||||    
T  23389335 agtcgcaataatgtaaacatatatagttaaaagaagttttataacaatttaaaaatatgttcccttataagacaacaatagaaacaaaatgaaatggtag 23389236  T
Q  133 tatacata 140  Q
     |||||||    
T  23389235 catacata 23389228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 27118798 - 27118858
Alignment:
Q  13 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagtttta 73  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  27118798 gagaagaagttaaacgaatgagtcgcaacaatgtaaacatatatagttaatagaagtttta 27118858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 24691820 - 24691742
Alignment:
Q  16 aagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttc 94  Q
    ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||| ||||||    
T  24691820 aagaacttaaacaaataagtcgcaacaatgtgaacatatatagttaatagaagtcatataaaaatttaaaaacatgttc 24691742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 8497727 - 8497860
Alignment:
Q  17 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaattt-aaaaatatgttcctttctactacatcaatagca 115  Q
    |||| |||| ||||| | |||||| |||||||| ||||||| || ||||||||||||||  | ||| ||||||||||||  |||||  ||| ||||||||    
T  8497727 agaatttaatcgaatcattcacaataatgtaaatatatataattgatagaagttttatatcagttttaaaaatatgttcacttctaagacaacaatagca 8497826  T
Q  116 acaaaatgagatggtagtatacataagaaaaagg 149  Q
    ||||||||| ||||||| ||| |||| |||||||    
T  8497827 acaaaatgaaatggtagcatagataacaaaaagg 8497860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 414537 - 414412
Alignment:
Q  21 gttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaa 120  Q
    ||||||||||||||||  | |||||||||||||||||||| |||||| |||||  || ||||||| ||||||||| |||||| ||| |||||| ||||||    
T  414537 gttaaacgaataagtcgtagcaatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaa 414438  T
Q  121 atgagatggtagtatacataagaaaa 146  Q
    |||| ||||||| |||||||| ||||    
T  414437 atgaaatggtagcatacataaaaaaa 414412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 9362211 - 9362075
Alignment:
Q  13 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaata 112  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||||| ||||| ||||||  || ||| | | | |||    
T  9362211 gagaagaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatataaaaattaaaaaacatgttcacttatacaataaccata 9362112  T
Q  113 gcaacaaaatgagatggtagtatacataagaaaaagg 149  Q
     ||||||||  ||||| ||| ||||||| ||||||||    
T  9362111 acaacaaaaatagatgatagaatacatatgaaaaagg 9362075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 28495494 - 28495595
Alignment:
Q  47 aaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 146  Q
    |||||||| |||||||||||| |||||||  |||||||||||||||||| | |||  ||| |||||||| |||||||| ||||||| |||||||| ||||    
T  28495494 aaacatatttagttaatagaaattttatagcaatttaaaaatatgttccctcctaagacaacaatagcagcaaaatgaaatggtagcatacataacaaaa 28495593  T
Q  147 ag 148  Q
    ||    
T  28495594 ag 28495595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 5076964 - 5076837
Alignment:
Q  21 gttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaac-aa 119  Q
    ||||||| | |||||| || |||||||||||||||||||| |||||| |||||  || ||||||| ||||||||| |||||| ||| |||||| ||| ||    
T  5076964 gttaaacaattaagtcgcagcaatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaa 5076865  T
Q  120 aatgagatggtagtatacataagaaaaa 147  Q
    ||||| | ||||| |||||||| |||||    
T  5076864 aatgaaacggtagcatacataaaaaaaa 5076837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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