View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_11 (Length: 263)
Name: NF10386_low_11
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 37624375 - 37624486
Alignment:
| Q |
152 |
acacaaaatctaagaagttgtttctactttttatcaacaaaagaaaatgttgctacttttaaattctctaatatgtgctcttagaaacaaagttagcatg |
251 |
Q |
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| T |
37624375 |
acacaaaatctaagaagatgtttctactttttatcaacaaaagaaaatgttgttacttttaaattctctaatatgtgctcttagaaacaaagttagcatg |
37624474 |
T |
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| Q |
252 |
acccttcatctc |
263 |
Q |
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|||||| ||||| |
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| T |
37624475 |
accctttatctc |
37624486 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 37624244 - 37624298
Alignment:
| Q |
21 |
aaatgacaagctaggatttatatgagaaatgttaatttgtgtccttaaagcacac |
75 |
Q |
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| T |
37624244 |
aaatgacaagctaggatttatatgagaaatgttaatttgtgtccttaaagcacac |
37624298 |
T |
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