View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_14 (Length: 252)
Name: NF10386_low_14
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 54423794 - 54424027
Alignment:
| Q |
11 |
caaaggctgcctgttcttggaaaattcatttgttaataagtggacgaagacgattgaccaggaccttagaaacgcgatcttgtataacacattgcagaga |
110 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54423794 |
caaaggctgcctgttcttgggaaatccatttgttaataagtggacgaagacgattgaccaggaccttagaaa--cgatcttgtataacacattgcagaga |
54423891 |
T |
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| Q |
111 |
gaaataggtcgaaggtcccgcatggatt-cggattatcaccctttggtgcaagcactatgtttgtagcatttaaatct-ggggtagataactcg------ |
202 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54423892 |
gaaataggtcgaaggtcccgcatggattccagattatcaccctttggtgcaagcactatgtttgtagcatttaaatctgggggtagataactcgaagtct |
54423991 |
T |
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| Q |
203 |
--aagctaaccaagactaggcagaagagaatatttc |
236 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
54423992 |
caaagctaaccaagacgaggcagaagagaatatttc |
54424027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 20121054 - 20120829
Alignment:
| Q |
11 |
caaaggctgcctgttcttggaaaattcatttgttaataagtggacgaagacgattgaccaggaccttagaaacgcgatcttgtataacacattgcagaga |
110 |
Q |
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|||||||||| ||||||||| |||| |||||||| || | |||| | ||||||||| | ||||||||||| | | |||||||| | ||||| |||||| |
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| T |
20121054 |
caaaggctgcttgttcttgggaaatccatttgttgattaatggatggagacgattggcaaggaccttagaga--caatcttgtacagtacattacagaga |
20120957 |
T |
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| Q |
111 |
gaaataggtcgaaggtcccgcatggatt-cggattatcaccctttggtgcaagcactatgtttgtagcatttaaatct-ggggtagataactcgaagcta |
208 |
Q |
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|||||||| |||||||| |||||||||| |||||| || |||||||| || || |||||||||||| ||||||| ||| |||| ||| || | ||||| | |
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| T |
20120956 |
gaaataggccgaaggtctcgcatggattccggattgtctccctttggagcgagaactatgtttgtaacatttaattctgggggcagagaagttgaagcca |
20120857 |
T |
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| Q |
209 |
accaagactaggcagaagagaatatttc |
236 |
Q |
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|||||||| ||||| ||||||| ||||| |
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| T |
20120856 |
accaagacaaggcaaaagagaaaatttc |
20120829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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