View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_16 (Length: 240)
Name: NF10386_low_16
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 26303522 - 26303655
Alignment:
| Q |
1 |
aatgaccaaaattgcaaatagtgttttatacatttgtgtttgcattatgaaatttaannnnnnnnnatctcttgaaaatggttagtgatcgggactaagt |
100 |
Q |
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| T |
26303522 |
aatgaccaaaattgcaaatagtgttttatacatttgtgtttgcattatgattttttttttttttttatctcttgaaaatggtcagtgatcgggactaagt |
26303621 |
T |
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| Q |
101 |
tagggcatgaatatatagttggttgcaatagagt |
134 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
26303622 |
tagggcatgaatatatagttggttgcaatagagt |
26303655 |
T |
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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 26303716 - 26303784
Alignment:
| Q |
156 |
attgagtttaagagtaaatcatagaagtgagttgtaaatatataaataatttatttaacgtatatattt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
26303716 |
attgagtttaagagtaaatcatagaagtgagttgtacaaatataaataatttatttaacgtatatattt |
26303784 |
T |
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