View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_17 (Length: 238)
Name: NF10386_low_17
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 2440890 - 2441109
Alignment:
| Q |
4 |
ggaaaagaatgaggaaattgtgaagccatctgggccaatcaccgcgaaatggatagaaaggaatccattgtgacttgaactcaaatgtggtgttagttca |
103 |
Q |
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| T |
2440890 |
ggaaaagaatgaggaaattgtgaagccatctgggccaatcaccgcgaaatggatagaaaggaatccattgtgacttgaactcaaatgtggtgttagttca |
2440989 |
T |
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| Q |
104 |
caacaaacattgaactgatatagtttcttgtaataaatgtttatattatcagtatggttcaactgatagattcttttaattagttaatgagacgtgttag |
203 |
Q |
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| T |
2440990 |
caacaaacattgaactgatatagtttcttgtaataaatgtttatattatcagtatggttcaactgatagattcttttaattagttaatgagacgtgttag |
2441089 |
T |
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| Q |
204 |
ttatcattaatagaggtaat |
223 |
Q |
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|||||||||||||||||||| |
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| T |
2441090 |
ttatcattaatagaggtaat |
2441109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 41656216 - 41656159
Alignment:
| Q |
5 |
gaaaagaatgaggaaattgtgaagccatctgggccaatcaccgcgaaatggatagaaa |
62 |
Q |
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| T |
41656216 |
gaaaagaatgaggaaattgtgaagccggctgggccagtcaccgtgaaatggatagaaa |
41656159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 41665000 - 41664944
Alignment:
| Q |
5 |
gaaaagaatgaggaaattgtgaagccatctgggccaatcaccgcgaaatggatagaa |
61 |
Q |
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|||||||||||| |||||||||||||||| | |||| |||||| ||||||||||||| |
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| T |
41665000 |
gaaaagaatgagcaaattgtgaagccatcagagccattcaccgagaaatggatagaa |
41664944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 41706209 - 41706153
Alignment:
| Q |
6 |
aaaagaatgaggaaattgtgaagccatctgggccaatcaccgcgaaatggatagaaa |
62 |
Q |
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||||||| |||||||| ||||||||||||||| | ||||| || ||||||||||||| |
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| T |
41706209 |
aaaagaaggaggaaatggtgaagccatctggggcgatcactgcaaaatggatagaaa |
41706153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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