View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_18 (Length: 234)
Name: NF10386_low_18
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_18 |
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| [»] scaffold0050 (2 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 8365 - 8218
Alignment:
| Q |
15 |
atgaaataggtaggaatgcaaataaatgaaataatagttatggttttcaattaaagaagatttaagtcagaggttccaggtttgataaatgaaaactaac |
114 |
Q |
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| T |
8365 |
atgaaataggtaggaatgcaaataaatgaaataatagttatggttttcaat-aaagaagatttaagtcagaggttccagatttgatcaatgaaaactaac |
8267 |
T |
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| Q |
115 |
attatccccttccctcgaacaacttactaacaattaacatttgcatatc |
163 |
Q |
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| T |
8266 |
attatccccttcccttgaacaacttactaacaattaacatttgcctatc |
8218 |
T |
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Target: scaffold0050; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 8199 - 8165
Alignment:
| Q |
182 |
cataactaaggtgaaatgaatgagtggaagaaatt |
216 |
Q |
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| T |
8199 |
cataacaaaggtgaaatgaatgagtggaagaaatt |
8165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 29500739 - 29500631
Alignment:
| Q |
13 |
agatgaaataggtaggaatgcaaataaatgaaataatagttatggttttcaattaaagaagatttaagtcagaggttccaggtttgataaatgaaaacta |
112 |
Q |
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|||||||||| |||| || ||||||||| ||||||| ||||| ||| ||| |||| || ||| |||||| | |||||| ||||||| |||||||||| |
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| T |
29500739 |
agatgaaatatgtagaaaggcaaataaagaaaataatggttattattt-caaataaaaaatattaaagtcacaagttccacgtttgatccatgaaaacta |
29500641 |
T |
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| Q |
113 |
acattatccc |
122 |
Q |
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| T |
29500640 |
acattttccc |
29500631 |
T |
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