View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_19 (Length: 233)
Name: NF10386_low_19
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1193072 - 1192864
Alignment:
| Q |
1 |
aaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggtttttggacacaatatttcttcatgctaatgtagt |
100 |
Q |
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| T |
1193072 |
aaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggttcttggacacaatatttcttcatgctaatgtagt |
1192973 |
T |
|
| Q |
101 |
cgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaatttgttctataaaacaagaatcatggaatttttagagagacactg |
200 |
Q |
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| T |
1192972 |
cgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaatttgttctataaaacaagaatcatggaatttttagacagacaccg |
1192873 |
T |
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| Q |
201 |
cactatatc |
209 |
Q |
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||||||||| |
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| T |
1192872 |
cactatatc |
1192864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 45642162 - 45642202
Alignment:
| Q |
21 |
cttagtgttggtcaaattacagttacaatatttctttcatg |
61 |
Q |
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|||||||||||||||||| |||| |||||||||| |||||| |
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| T |
45642162 |
cttagtgttggtcaaatttcagtcacaatatttccttcatg |
45642202 |
T |
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