View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_2 (Length: 539)
Name: NF10386_low_2
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Original strand, 35789925 - 35790407
Alignment:
| Q |
18 |
aaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaattgatat--ctacttgaacatagccaaaatcaagacattataaga |
115 |
Q |
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| T |
35789925 |
aaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaattgatatatctacttgaacatagccaaaatcaagacattataaga |
35790024 |
T |
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| Q |
116 |
tcatcaaaatataacaccataatcaaaacagtttcatgtatgataagttgcatataacaattaaccaatttaatgagatagggttttgtttataatgtgt |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| |
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| T |
35790025 |
tca---aaatataacaccataatcaaaacagtttcatgtatgataagttgcatataacact-aaccaatttaatgagatagggttttgtttaaaatgtgt |
35790120 |
T |
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| Q |
216 |
cacgataagatttcaactcacccctcttttttctattatgcgtcgatacaaattaaaaggaaaagagaaaataaatacagtttgacatcaaagagtaaat |
315 |
Q |
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| T |
35790121 |
cacgataagatttcaact------------------tatgcatcgatacaaattaaaaggaaaagagaaaataaaaacagtttgacatcaaagagtaa-t |
35790201 |
T |
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| Q |
316 |
ccatgcaaaaactgaagaatgaataaaagcaaaaggaaagaaactaacgttgtttttcgttatacgatgatgataatcggtaagccattatgacgatgat |
415 |
Q |
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| T |
35790202 |
ccatgcaaaaactgaagaatgaataaaagcaaaaggaaagaaactaacgttgtttttcgttatacgatgatgataatcggtaagccattatgacgatgat |
35790301 |
T |
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| Q |
416 |
gttggtttggaacacaaacaaagacagtgttctgagttttctttctctcttgccttccaccaaatattacttcaaatcacttgtactatctctttattta |
515 |
Q |
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| T |
35790302 |
gttggtttggaacacaaacaaagacagtgttctgaggtttctttctctcttgccttccaccaaatattacttcaaaccacttg---tatctctttattta |
35790398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 35800337 - 35800394
Alignment:
| Q |
276 |
aaaagagaaaataaatacagtttgacatcaaagagtaaatccatgcaaaaactgaagaa |
334 |
Q |
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||||||||||||||| ||||||| |||||||||| | |||||||||||||||||||||| |
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| T |
35800337 |
aaaagagaaaataaaaacagtttcacatcaaaga-tcaatccatgcaaaaactgaagaa |
35800394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 35761135 - 35761195
Alignment:
| Q |
18 |
aaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaattgata |
78 |
Q |
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|||||||||||||| |||| |||||||| | | |||| |||||||||||||||||||||| |
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| T |
35761135 |
aaaggcactgttggaaacctattatctgcgaaccaaaaggaataaatagaatcaattgata |
35761195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 35799568 - 35799627
Alignment:
| Q |
18 |
aaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaattgata |
78 |
Q |
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|||||||||||||| |||| ||||||||| | | |||| |||||||||||||||||||||| |
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| T |
35799568 |
aaaggcactgttggaaacctattatctgtgaaccaaaa-gaataaatagaatcaattgata |
35799627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 35799826 - 35799897
Alignment:
| Q |
78 |
atctacttgaacatagccaaaatcaagacattataagatcatcaaaatataacaccataatcaaaacagtttcatgta |
155 |
Q |
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| T |
35799826 |
atctccttgaacatggccaaaatcaagacattttcagatc----aaatata--accataatcaaaacagattcatgta |
35799897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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