View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10386_low_4 (Length: 405)

Name: NF10386_low_4
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10386_low_4
NF10386_low_4
[»] chr8 (6 HSPs)
chr8 (40-386)||(31877535-31877880)
chr8 (166-386)||(31560969-31561186)
chr8 (167-363)||(31558993-31559181)
chr8 (203-365)||(31556020-31556173)
chr8 (328-386)||(31559210-31559272)
chr8 (328-385)||(31556200-31556261)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 40 - 386
Target Start/End: Complemental strand, 31877880 - 31877535
Alignment:
Q  40 aagtcacgttaaaattttccttccttctcaaactgcagaagcctccctattccatacaatcatatgttaatgaagtacaggtttatacttttattgcata 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31877880 aagtcacgttaaaattttccttccttctcaaactgcagaagcctccctattccatacaatcatatgttaataaagtacaggtttatacttttattgcata 31877781  T
Q  140 tgctggaaattcctttttatacatgtacatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtc 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31877780 tgctggaaattcctttttatacatgtacatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtc 31877681  T
Q  240 cttatttttccccatcattaatggattttggcagtgcaaattaatcactatcagtctattggttacagccctacaacagaagacgatattcactgtcgcg 339  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31877680 ctta-ttttccccatcattaatggattttggcagtgcaaattaatcagtatcagtctattggttacagccctacaacagaagacgatattcactgtcgcg 31877582  T
Q  340 aaactatcttcaacctatgtacaacttggacaatcacatattctcta 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31877581 aaactatcttcaacctatgtacaacttggacaatcacatattctcta 31877535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 166 - 386
Target Start/End: Original strand, 31560969 - 31561186
Alignment:
Q  166 acatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtcctta-----tttttccccatcattaa 260  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||      |||||| || ||||||     
T  31560969 acatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttttttttctccgtcattac 31561068  T
Q  261 tggattttggcagtgcaaattaatcactatcagtctattggttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgta 360  Q
    |||||||||||||||  ||||| ||| |||||||        ||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  31561069 tggattttggcagtgtcaattactcaatatcagt--------tacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgta 31561160  T
Q  361 caacttggacaatcacatattctcta 386  Q
    ||||||| ||||||||||||||||||    
T  31561161 caacttgaacaatcacatattctcta 31561186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 363
Target Start/End: Original strand, 31558993 - 31559181
Alignment:
Q  167 catttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtccttatttttccccatcattaatggatt 266  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  31558993 catttttcattttatgtcaaatgtatctctgtagataattgaattggccttctattcttgaattatatttgtctttatttttccccatcattactggatt 31559092  T
Q  267 ttggcagtgcaaattaatcactatcagtctattggttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgtacaa 363  Q
    ||||| |||||||||| | | |||||        ||||||||||| ||||||||||| ||||||||||||||| | ||||| ||| ||||| |||||    
T  31559093 ttggctgtgcaaattattaaatatca--------gttacagccctccaacagaagacaatattcactgtcgcggatctatcctcagcctatctacaa 31559181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 31556020 - 31556173
Alignment:
Q  203 aattgaattggcattctattcttgaattatatttgtccttatttttccccatcattaatggattttggcagtgcaaattaatcactatcagtctattggt 302  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |||||        ||    
T  31556020 aattgaattggcattctattcttgaattatatttgtctttattttt-cccatcattactggattttggcagtgcaaattaatcagtatca--------gt 31556110  T
Q  303 tacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgtacaact 365  Q
    ||||||||| |||| |||||| ||||||||||||||| | ||||  ||| |||||||||||||    
T  31556111 tacagccctccaactgaagacaatattcactgtcgcggatctattatcagcctatgtacaact 31556173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 31559210 - 31559272
Alignment:
Q  328 ttcactgtcgcgaaactatcttcaacctatgtaca----acttggacaatcacatattctcta 386  Q
    |||||||||||| | ||||||||||||||||||||    ||||||||||||||||||||||||    
T  31559210 ttcactgtcgcggatctatcttcaacctatgtacatacaacttggacaatcacatattctcta 31559272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 31556200 - 31556261
Alignment:
Q  328 ttcactgtcgcgaaactatcttcaacctatgtaca----acttggacaatcacatattctct 385  Q
    |||| ||||||| | ||||||||||||||||||||    |||||||||||||||||||||||    
T  31556200 ttcattgtcgcggatctatcttcaacctatgtacatacaacttggacaatcacatattctct 31556261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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