View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_6 (Length: 389)
Name: NF10386_low_6
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 50047161 - 50046880
Alignment:
| Q |
1 |
tggttacaagtattactacagaggagtaaaaaaggggaaagaagatgtagatatagtatttaccacctacgtttcctacgtttaaagtttttatgctatt |
100 |
Q |
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| T |
50047161 |
tggttataagtattactacagaggagtaaaaaaggggaaagaagatgtagatatagtatttaccacctacgtttcctacctttaaagtttttatgctatt |
50047062 |
T |
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| Q |
101 |
aagtttgtcaagcagggtttaaaatactgttaactgcttcttttctaagccagacatgcttagcttagacataatttcttatattaaaaataccaaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50047061 |
aagtttgtcaagcagggtttaaaatactgttaactgcttcttttctaagccagacatgcttagcttagacataatttcttatattaaaaataccaaagtt |
50046962 |
T |
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| Q |
201 |
tgagcaaatatccctatatcctagtcaactttcagcttaactgcattcaaatctctactatggttaccattcttatattctg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50046961 |
tgagcaaatatccctatatcctagtcaactttcagcttaactgcattcaaatctctactatggttaccattcttatattctg |
50046880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 50046846 - 50046777
Alignment:
| Q |
315 |
gaaattattgccgtgaaattctttcataacttttcttctactttaagctcatatggttacctttgcttct |
384 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50046846 |
gaaattattgccgtgaaattcttccataacttttcttctactttaagctcatatggttaccttttcttct |
50046777 |
T |
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