View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10386_low_7 (Length: 356)
Name: NF10386_low_7
Description: NF10386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10386_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 18926945 - 18927185
Alignment:
| Q |
1 |
gaaaaaccaagaaccggagaagatacacctgctccggagatatttgcagatagtgatactgactagaatacagaatgtgagattttttggtctagagtat |
100 |
Q |
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| T |
18926945 |
gaaaaatcaagaaccggagaagatacacctgctccggagatatttgcagatagtgataccgactagaatacagaatgttagattttttggtctagagtat |
18927044 |
T |
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| Q |
101 |
agagttcaaaatggttgtggcactatattttgcaccagttaggtgtgtacaagactttgatgttatgaggataaatttaaaagttgtgttttcttttatt |
200 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18927045 |
agagttcaaaatggttatggcactgtattttgcaccagttaggtgtgtacaagactttgatgttatcaggataaatttaaaagttgtgttttcttttatt |
18927144 |
T |
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| Q |
201 |
tttgcgaactcaagcaggtttagtggcttcaagctgcaaat |
241 |
Q |
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| T |
18927145 |
tttgcgaactcaagcaggtttagcggcttcaagctgcaaat |
18927185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 18927365 - 18927466
Alignment:
| Q |
238 |
aaatgaagaacaaatttgtgttctttagattattattattttctttttcaaagagactaacggcgaaacttaccaacactacatacaaagtagagtacta |
337 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18927365 |
aaatgaagaacaaatttgtgttatttagattattattattttctttttcaaagagactaacggcgaaacttaccaacactacatacaaagtagagcacta |
18927464 |
T |
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| Q |
338 |
aa |
339 |
Q |
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| T |
18927465 |
aa |
18927466 |
T |
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