View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10387_1 (Length: 434)

Name: NF10387_1
Description: NF10387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10387_1
NF10387_1
[»] chr8 (2 HSPs)
chr8 (23-428)||(2905996-2906401)
chr8 (23-428)||(2853968-2854373)


Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 23 - 428
Target Start/End: Original strand, 2905996 - 2906401
Alignment:
Q  23 acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2905996 acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct 2906095  T
Q  123 agactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg 222  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2906096 agactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg 2906195  T
Q  223 ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttg 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  2906196 ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccgccaccaacaggggaatgagaaggggattttg 2906295  T
Q  323 taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttggatgatgtccatctca 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  |    
T  2906296 taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaa 2906395  T
Q  423 ttgaac 428  Q
    ||||||    
T  2906396 ttgaac 2906401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 23 - 428
Target Start/End: Original strand, 2853968 - 2854373
Alignment:
Q  23 acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2853968 acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct 2854067  T
Q  123 agactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg 222  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2854068 agactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg 2854167  T
Q  223 ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttg 322  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||  ||||||||||||||| |||||||||||||||||||||||    
T  2854168 ctgccgccaccaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgccaccaccaacaggggaatgagaaggggattttg 2854267  T
Q  323 taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttggatgatgtccatctca 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  |    
T  2854268 taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtatgatgttcatcaaa 2854367  T
Q  423 ttgaac 428  Q
    ||||||    
T  2854368 ttgaac 2854373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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