View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10387_5 (Length: 303)
Name: NF10387_5
Description: NF10387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10387_5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 114 - 303
Target Start/End: Original strand, 40714913 - 40715102
Alignment:
| Q |
114 |
ttctgtgctcattgtcggatgcttggccatagcatcaagaattgcctgaaactaagtgcttctaatcagcagaatgctacttccattagggacaaagcga |
213 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40714913 |
ttctgtgctcattgccggatgcttggacatagcatccataattgcttgaaactaagtgcttctaatcagcaggatgctacttccattagggacaaagcga |
40715012 |
T |
|
| Q |
214 |
tccctgctactggtaagatgattagaaatcaaaatcagaaagtgaaacctaatcccactagccactttaacatgtctgttcagccagtgg |
303 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40715013 |
tccctgctactagtaaggtgattagaaatcaaaatcagaaagtgaaacctaatcccactagccattttaacatgtctgttcagccagtgg |
40715102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 45668446 - 45668532
Alignment:
| Q |
22 |
catcatcacaaaaactttaagacattaagtttatgaattctcgcaattatatgttgttcaacctcaactcttttatgatcaaacgtg |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45668446 |
catcttcacaaaaactttaagacattaagtttatgagttctctcaattatatgttgttcaacctcaactcttttataatcaaacgtg |
45668532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University