View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10387_low_2 (Length: 279)
Name: NF10387_low_2
Description: NF10387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10387_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 10297185 - 10296931
Alignment:
| Q |
18 |
ggttccactatgtagattgtaacattgcattcaacaacctcaaaaaactaaactgcacttacctattaacatggacagtttgttcgaaaacaacattcaa |
117 |
Q |
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| T |
10297185 |
ggttccactatgtagattgtaacattgcattcaacaacctcaaaaaaataaactgcacttaactattaacatggacagtttgtttgaaaacaacattcaa |
10297086 |
T |
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| Q |
118 |
cacagatttaccggttaaagaatcacactcacagaaccaatcttttacaaggatttacattatgatttagcgggcgagtctttgcacaatgataaggttg |
217 |
Q |
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| T |
10297085 |
cacagatttaccggttaaagaatcacactcacagaaccaatcttttacaaggatttacattaagatttagcgggcgagtctttgcacaattataaggttg |
10296986 |
T |
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| Q |
218 |
gtgtcttgtgatctagaagtcacacattcaaattataaaaaccacctctctgctt |
272 |
Q |
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| T |
10296985 |
gtgtcttgtgatctagaagtcacacattcaaattataaaaacaacctctctgctt |
10296931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 10288666 - 10288421
Alignment:
| Q |
18 |
ggttccactatgtagattgtaacattgcattcaacaacctcaaaaaactaaactgcacttacctattaacatggacagtttgttcgaaaacaacattcaa |
117 |
Q |
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| T |
10288666 |
ggttcctctaggtagcctgtaacattgcattcaataacctcaaaaa--taaactgcattttaaaattaacattgacaatttgttctaagacaacattcaa |
10288569 |
T |
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| Q |
118 |
cacagatttaccggttaaagaatcacactcacagaaccaatcttttacaagg-atttacatt--atgatttagcgggcg---agtctttgcacaatgata |
211 |
Q |
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| T |
10288568 |
cacagattgctgggttaaagaaacacactcacataaccaatcttttacaaggcatttacattttatgatttagagggccgcaagtcgttgcacaatgatt |
10288469 |
T |
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| Q |
212 |
aggttggtgtcttgtgatctagaagtcacacattcaaattataaaaac |
259 |
Q |
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| T |
10288468 |
aggttggtgtcctgtgatctagaagtcacatgtccaaatcataaaaac |
10288421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 10304425 - 10304367
Alignment:
| Q |
192 |
cgagtctttgcacaatgataaggttggtgtcttgtgatctagaagtcacacattcaaat |
250 |
Q |
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| T |
10304425 |
cgagcctttgtacaattacaaggtttatgtcttgtgatctagaaatcacacattcaaat |
10304367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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