View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10388_high_1 (Length: 631)
Name: NF10388_high_1
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10388_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Complemental strand, 28199717 - 28199182
Alignment:
| Q |
18 |
catttccctttattcaacttcaaattaggttaattcagttctctatctcaaggaaattattcccatgaaattctagagattgaaacatttaccctcttga |
117 |
Q |
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| T |
28199717 |
catttccctttattcaacttcaaattaggttaattcagttctctatcataaggaaattattcccatgaaattctagagattgaaacatttaccctcttga |
28199618 |
T |
|
| Q |
118 |
aatctgcaaataagcaaaaaa-tatttgattttgaatgaatttgggcaacttggtcattttgttacctgtaaggactaatttgacaataagcgatataat |
216 |
Q |
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| T |
28199617 |
aatctgcaaataagcaaaaaaatatttgattttgaatgaatttgggcaacttggtcattttgttacttgtaaggactaatttgacaataagcgatataat |
28199518 |
T |
|
| Q |
217 |
tcagctagtttgattataggtgatataattcagggactaatttgctagtaatggatataatttgtggattaatttgctactaagtgatattattcaggga |
316 |
Q |
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| T |
28199517 |
tcagctagtttgattataggtgatataattcagggactaatttgctagtaatcgatataatttgtggattaatttgctactaagtgatattattcaggga |
28199418 |
T |
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| Q |
317 |
ctaatttgatagtctatcagatacaaattagcagaatgaccaagttgctcgacataattcaaaatcagcatcatttttgcctattcacaaatgtcagagg |
416 |
Q |
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| T |
28199417 |
ctaatttgatagtctatcagatacaaattagcagaatgaccaagttgctcgacataattcaaaatcagcatcatttttgcctattcacaaatgtcagagg |
28199318 |
T |
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| Q |
417 |
tgtgaatgtcaaatcctacaatttcagggggctaattggtgatttaattgaaaattttcatatttggcacgatttctattcattgcatatagtggtattt |
516 |
Q |
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| T |
28199317 |
tgtgaatgtcagatcctacaatttcagggggctaattggtgatttaattgaaaattttcatatttggcacgatttctattcattgcat-tagtggtattt |
28199219 |
T |
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| Q |
517 |
taactttcattaaatgactcacaaacgttcaatattg |
553 |
Q |
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| T |
28199218 |
taactttcattaaatgacgcaccaacgttcaatattg |
28199182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 382
Target Start/End: Complemental strand, 22771744 - 22771613
Alignment:
| Q |
250 |
ggactaatttgctagtaatggatataatttgtggattaatttgctactaagtgatattattcagggactaatttgatagtctatcagatacaaattagca |
349 |
Q |
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|||||| |||| |||||| |||||| ||| || |||||||| || |||||||||| ||| ||||||| |||||| | | || |||||||| |||| |
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| T |
22771744 |
ggactagtttgatagtaagtgatatagtttaggggttaatttgttattaagtgatataattgagggacttatttgacaataaattagatacaagttagt- |
22771646 |
T |
|
| Q |
350 |
gaatgaccaagttgctcgacataattcaaaatc |
382 |
Q |
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| T |
22771645 |
gaaggacaaagttgctcaacataattcaaaatc |
22771613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 237 - 406
Target Start/End: Original strand, 41688453 - 41688625
Alignment:
| Q |
237 |
tgatataattcagggactaatttgctagtaatggatataatttgtggat----taatttgctactaagtgatattattcagggactaatttgatagtcta |
332 |
Q |
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| T |
41688453 |
tgatataattcatggactgatttgctagtaattgatataattcagggagggactaatttgctagtaagtaatataatttgggggctaatttgacagtaaa |
41688552 |
T |
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| Q |
333 |
tcagatacaaattagcagaatgaccaagttgctcgacataattcaaaatcagcatcatttttgcctattcacaa |
406 |
Q |
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| |||||||| ||| |||| ||||||||||||||||||||||||||||| | || ||||||| ||||||||| |
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| T |
41688553 |
ttagatacaagttaatagaagaaccaagttgctcgacataattcaaaatcaacgtc-tttttgcttattcacaa |
41688625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 41688438 - 41688500
Alignment:
| Q |
254 |
taatttgctagtaatggatataatttgtggattaatttgctactaagtgatattattcaggga |
316 |
Q |
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||||||||||||||| ||||||||| |||| | |||||||| ||| |||||| ||||||||| |
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| T |
41688438 |
taatttgctagtaattgatataattcatggactgatttgctagtaattgatataattcaggga |
41688500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 54064642 - 54064727
Alignment:
| Q |
297 |
taagtgatattattcagggactaatttgatagtctatcagatacaaattagcagaatgaccaagttgctcgacataattcaaaatc |
382 |
Q |
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|||||||||| ||||| ||||||||||| | | || |||||||| ||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
54064642 |
taagtgatataattcaatgactaatttgacattaaattagatacaagttattagaaggaccaagctgctccacataattcaaaatc |
54064727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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