View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10388_high_4 (Length: 278)
Name: NF10388_high_4
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10388_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 41015528 - 41015777
Alignment:
| Q |
18 |
attttgtattctgaatttgcgttttggtttgactatctatgaataacacgcttattatgttgttatctgtttcttgcagcacccttggatccaaatccat |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41015528 |
attttgtattctaaatttgcgttttggtttgactatctatgaataacacgcttattatgttgttatctgtttcttgcagcacccttggatccaaatccat |
41015627 |
T |
|
| Q |
118 |
taactgacatagacaggaatatgattgagcatgatgttgaatgggagtagactactgttgttttaatcatgcgaagtttttaaaatatatacacaatcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41015628 |
taactgacatagacaggaatatgattgagcatgatgttgaatgggagtagactactgttgttttaatcatgcaaagtttttaaaatatatacacaatcat |
41015727 |
T |
|
| Q |
218 |
atgcttatcatgctggtttattttgtacaagcttttgttatgctccctat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41015728 |
atgcttatcatgctggtttattttgtacaagcttctgttatgctccctat |
41015777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 34576071 - 34576145
Alignment:
| Q |
55 |
tatgaataacacgcttattatgttgttatctgtttcttgcagcacccttggatccaaatccattaactgacatag |
129 |
Q |
| |
|
||||||||||||| || |||||||| ||| | ||| ||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
34576071 |
tatgaataacacgtttcttatgttggtatatttttgttgcagcgcccttggatcccaatccattaactgatatag |
34576145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University