View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10388_low_10 (Length: 241)
Name: NF10388_low_10
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10388_low_10 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 5678014 - 5677792
Alignment:
| Q |
19 |
tatatgacagtgtgtatgaattaaattcgttgcagtatccattagtctccaagtgtggatacattcggaaactcgtctcagaatctaatgactcggacgt |
118 |
Q |
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| T |
5678014 |
tatatgacagtgtgtatgaattaaattcgttgcagtatccattagtctccaagtgtggatacattcggaaactcgtctcagaatctaatgactcggacgt |
5677915 |
T |
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| Q |
119 |
gtcctttgttgaactctccgatgttcctggtggagcagaagcatttgaactagcagcaaaattctgctacggtataaatttcgagataaatgtggaaaac |
218 |
Q |
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| T |
5677914 |
gtcctttgttgaactctccgatgttcctggtggagcagaagcatttgaactagcagcaaaattctgctacggtataaatttcgagataaatgtggaaaac |
5677815 |
T |
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| Q |
219 |
atcgctatgcttcgatgtgtggc |
241 |
Q |
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| T |
5677814 |
atcgctatgcttcgatgtgtggc |
5677792 |
T |
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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 39777502 - 39777613
Alignment:
| Q |
127 |
ttgaactctccgatgttcctggtggagcagaagcatttgaactagcagcaaaattctgctacggtataaatttcgagataaatgtggaaaacatcgctat |
226 |
Q |
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| T |
39777502 |
ttgaactcatcgatgtccctggtggatcagaagcatttgaactagcagcaaagttctgttacgggataaacttcgaaataagcgtcgaaaacatcgctat |
39777601 |
T |
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| Q |
227 |
gcttcgatgtgt |
238 |
Q |
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| T |
39777602 |
gcttcgatgtgt |
39777613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 47798623 - 47798527
Alignment:
| Q |
145 |
ctggtggagcagaagcatttgaactagcagcaaaattctgctacggtataaatttcgagataaatgtggaaaacatcgctatgcttcgatgtgtggc |
241 |
Q |
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|||||||| ||||| ||||||||||||||||||| ||||| ||| | ||||| || || |||| || |||| |||| ||||||||||||||||||| |
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| T |
47798623 |
ctggtggatcagaaacatttgaactagcagcaaagttctgttactggataaactttgaaataagcgttgaaagcatcactatgcttcgatgtgtggc |
47798527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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