View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10388_low_11 (Length: 238)

Name: NF10388_low_11
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10388_low_11
NF10388_low_11
[»] chr7 (3 HSPs)
chr7 (147-225)||(41552470-41552548)
chr7 (150-225)||(6610601-6610676)
chr7 (150-225)||(6623446-6623521)
[»] chr4 (2 HSPs)
chr4 (147-225)||(55045769-55045847)
chr4 (38-120)||(50998244-50998326)
[»] chr1 (2 HSPs)
chr1 (147-225)||(19145226-19145304)
chr1 (147-225)||(23672562-23672640)
[»] chr3 (1 HSPs)
chr3 (147-225)||(4271276-4271354)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 41552548 - 41552470
Alignment:
Q  147 ggaaaagtatacatagacacatcaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 225  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41552548 ggaaaagtatacatagacacaccaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 41552470  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 6610676 - 6610601
Alignment:
Q  150 aaagtatacatagacacatcaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 225  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6610676 aaagtatacatagacacaccaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 6610601  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 6623446 - 6623521
Alignment:
Q  150 aaagtatacatagacacatcaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 225  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6623446 aaagtatacatagacacaccaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 6623521  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 55045847 - 55045769
Alignment:
Q  147 ggaaaagtatacatagacacatcaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 225  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55045847 ggaaaagtatacatagacacaccaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 55045769  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 50998326 - 50998244
Alignment:
Q  38 cttttcaattaggtccttatatttagagaccttttagtcaacggttggtcaactctgtctggtgtatcaaatgtcacaaatca 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  50998326 ctttttaattaggtccttatatttagagaccttttagtcaacggttggtcaactatgtctggtgtatcacatgtcacaaatca 50998244  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 19145226 - 19145304
Alignment:
Q  147 ggaaaagtatacatagacacatcaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 225  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19145226 ggaaaagtatacatagacacaccaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 19145304  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 23672562 - 23672640
Alignment:
Q  147 ggaaaagtatacatagacacatcaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 225  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23672562 ggaaaagtatacatagacacaccaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 23672640  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 4271354 - 4271276
Alignment:
Q  147 ggaaaagtatacatagacacatcaaatgtcacacaccccttcataccaccaatgacatggctaaaatactttaaaaaat 225  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4271354 ggaaaagtatacatagacacaccaaatgtcacacaccccttcataccaccaatgacatggctaaaatacttaaaaaaat 4271276  T

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