View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10388_low_15 (Length: 205)

Name: NF10388_low_15
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10388_low_15
NF10388_low_15
[»] chr3 (10 HSPs)
chr3 (123-178)||(8895303-8895358)
chr3 (123-179)||(14206695-14206751)
chr3 (123-179)||(14214443-14214499)
chr3 (126-185)||(48338034-48338093)
chr3 (123-185)||(46688545-46688607)
chr3 (123-179)||(46690208-46690264)
chr3 (4-51)||(8895430-8895477)
chr3 (127-185)||(50003141-50003199)
chr3 (125-169)||(43393966-43394010)
chr3 (137-185)||(48336487-48336535)
[»] chr1 (5 HSPs)
chr1 (123-185)||(45042749-45042811)
chr1 (123-179)||(52439199-52439255)
chr1 (123-185)||(49618571-49618633)
chr1 (123-177)||(49619732-49619786)
chr1 (125-169)||(52087687-52087731)
[»] scaffold0065 (2 HSPs)
scaffold0065 (123-179)||(35508-35564)
scaffold0065 (123-185)||(36626-36688)
[»] chr8 (4 HSPs)
chr8 (123-179)||(11080946-11081002)
chr8 (123-179)||(35462903-35462959)
chr8 (123-185)||(12820013-12820075)
chr8 (143-185)||(35462807-35462849)
[»] chr5 (6 HSPs)
chr5 (123-179)||(30916032-30916088)
chr5 (123-179)||(30915643-30915699)
chr5 (123-179)||(33362481-33362537)
chr5 (123-185)||(14357796-14357858)
chr5 (123-179)||(14356577-14356633)
chr5 (125-169)||(30674746-30674790)
[»] chr4 (11 HSPs)
chr4 (123-179)||(20944422-20944478)
chr4 (123-186)||(20945391-20945454)
chr4 (126-185)||(54372886-54372945)
chr4 (126-185)||(54373869-54373928)
chr4 (123-185)||(49923679-49923741)
chr4 (123-185)||(49922647-49922709)
chr4 (126-179)||(17521960-17522013)
chr4 (140-185)||(21570354-21570399)
chr4 (126-179)||(37642457-37642510)
chr4 (126-179)||(46425918-46425971)
chr4 (129-169)||(48499525-48499565)
[»] chr7 (12 HSPs)
chr7 (124-179)||(22794237-22794292)
chr7 (125-185)||(29409154-29409214)
chr7 (132-179)||(29408392-29408439)
chr7 (123-185)||(4973653-4973715)
chr7 (127-185)||(42520361-42520419)
chr7 (130-185)||(47536771-47536826)
chr7 (123-185)||(19218895-19218957)
chr7 (123-185)||(29657130-29657192)
chr7 (126-163)||(36395975-36396012)
chr7 (123-179)||(29658528-29658584)
chr7 (137-185)||(32893597-32893645)
chr7 (123-179)||(46203568-46203624)
[»] chr2 (4 HSPs)
chr2 (124-179)||(12364336-12364391)
chr2 (124-185)||(12365933-12365994)
chr2 (130-185)||(370907-370962)
chr2 (130-179)||(20921657-20921706)
[»] scaffold1337 (1 HSPs)
scaffold1337 (127-185)||(373-431)
[»] scaffold0041 (2 HSPs)
scaffold0041 (123-185)||(1038-1100)
scaffold0041 (123-185)||(707-769)
[»] chr6 (5 HSPs)
chr6 (123-185)||(682405-682467)
chr6 (123-185)||(683456-683518)
chr6 (127-179)||(13561424-13561476)
chr6 (127-163)||(13562214-13562250)
chr6 (125-169)||(34995512-34995556)
[»] scaffold0026 (1 HSPs)
scaffold0026 (125-169)||(104412-104456)


Alignment Details
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 8895358 - 8895303
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcc 178  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  8895358 taaaataaattacgtgttggtgatacacggttagatctgatagacctaatttatcc 8895303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 14206695 - 14206751
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  14206695 taaaataaattagatattggtgatacacagttagatctgatagacctcatttatcca 14206751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 14214443 - 14214499
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  14214443 taaaataaattagatattggtgatacacagttagatctgatagacctcatttatcca 14214499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 48338034 - 48338093
Alignment:
Q  126 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||| || |||||||||||||| |||||||||||||||||| || ||||||||||||    
T  48338034 aataaatcaggtgttggtgatacacagttagatctgatagacctcatatatccagcggtc 48338093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 46688607 - 46688545
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||||||| |||||||||||||| ||||||| ||||  ||||  ||||||||||||||    
T  46688607 taaaataaattaggtgttggtgatacacagttagatatgatgaacctgctttatccagcggtc 46688545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 46690208 - 46690264
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    ||||||||||||| |||||||||||||||||||||| || || ||||  ||||||||    
T  46690208 taaaataaattaggtgttggtgatacacggttagatatggtaaacctcctttatcca 46690264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 8895477 - 8895430
Alignment:
Q  4 agtgagatgaataatattcagagtttaatataattttattttagcttt 51  Q
    ||||| |||||||||||||||||| |||| |||||| |||||||||||    
T  8895477 agtgatatgaataatattcagagtctaatttaatttaattttagcttt 8895430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 50003141 - 50003199
Alignment:
Q  127 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||  |||||||||||||| |||||||||||| |||||  |||||||| |||||    
T  50003141 ataaattatgtgttggtgatacaccgttagatctgattgacctcctttatccaacggtc 50003199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 43393966 - 43394010
Alignment:
Q  125 aaataaattagatgttggtgatacacggttagatctgatagacct 169  Q
    ||||||||||| |||||||||||||| || | |||||||||||||    
T  43393966 aaataaattaggtgttggtgatacactgtaaaatctgatagacct 43394010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 48336535 - 48336487
Alignment:
Q  137 tgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||||||| ||||||||| ||| |||| ||||||||| |||||    
T  48336535 tgttggtgatacacagttagatctaataaacctcatttatccaacggtc 48336487  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 45042811 - 45042749
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |||||    
T  45042811 taaaataaattagatgttgatgatacacggttagatctgatatacctcatttatccaacggtc 45042749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 52439199 - 52439255
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||| |||||||| |||||||||||||| |||||||||||||||| | |||||||||    
T  52439199 taaagtaaattaggtgttggtgatacacagttagatctgatagacttcatttatcca 52439255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 49618633 - 49618571
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||| |  |||||||||||| | |||||||||||||||||| ||||||||| |||||    
T  49618633 taaaataaatcaagtgttggtgatactcagttagatctgatagacctcatttatccaacggtc 49618571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 49619732 - 49619786
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatc 177  Q
    |||||||||| || |||||||||||||| |||| ||||||||||||| |||||||    
T  49619732 taaaataaatcaggtgttggtgatacacagttaaatctgatagacctcatttatc 49619786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 52087687 - 52087731
Alignment:
Q  125 aaataaattagatgttggtgatacacggttagatctgatagacct 169  Q
    |||||||||||||||||||||||||| || | || ||||||||||    
T  52087687 aaataaattagatgttggtgatacaccgtaaaatttgatagacct 52087731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 35564 - 35508
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    ||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||    
T  35564 taaaataaattaggtgttggtgatacacagttagatctgataaacctcatttatcca 35508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 36626 - 36688
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||| ||||||  || |||||||||| |||||||||||||||||| ||||||||| |||||    
T  36626 taaaattaattaggcgtgggtgatacacagttagatctgatagacctcatttatccaacggtc 36688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 11080946 - 11081002
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||||||| || |||||||||||||| |||||||||||||||||| |||||||||    
T  11080946 taaaataaatcaggtgttggtgatacacagttagatctgatagacctcatttatcca 11081002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 35462903 - 35462959
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||    
T  35462903 taaaataaattaggtgttggtgatacactgttagatcagatagacctcatttatcca 35462959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 12820013 - 12820075
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||||||| |||||||||||||| ||||||| ||||  ||||  |||||||| |||||    
T  12820013 taaaataaattaggtgttggtgatacacagttagatatgatgaacctcctttatccaacggtc 12820075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 35462849 - 35462807
Alignment:
Q  143 tgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||||||||||||||||||||  |||||||| |||||    
T  35462849 tgatacacggttagatctgatagacctcgtttatccaacggtc 35462807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 30916032 - 30916088
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||    
T  30916032 taaaataaatcaggtgttggtaatacacagttagatctgatagacctaatttatcca 30916088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 30915699 - 30915643
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||||||| || |||||||||||||| |||||||||||||||||| || ||||||    
T  30915699 taaaataaatcaggtgttggtgatacacagttagatctgatagacctcatatatcca 30915643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 33362481 - 33362537
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||||||| || | |||||||||||| |||||||||||||||||| |||||||||    
T  33362481 taaaataaataaggtattggtgatacacagttagatctgatagacctcatttatcca 33362537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 14357796 - 14357858
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||| | || |||||||||||||| ||||||| ||||||| || ||||||||| |||||    
T  14357796 taaaataattcaggtgttggtgatacacagttagatatgatagatctcatttatccaacggtc 14357858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 14356633 - 14356577
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||||||| || ||||||||||||||  |||||| |||||||||| ||| |||||    
T  14356633 taaaataaatcaggtgttggtgatacacaattagatgtgatagacctcattcatcca 14356577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 30674746 - 30674790
Alignment:
Q  125 aaataaattagatgttggtgatacacggttagatctgatagacct 169  Q
    ||||||||||| ||||||||||||| |||||||||| | ||||||    
T  30674746 aaataaattaggtgttggtgatacatggttagatcttacagacct 30674790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 20944478 - 20944422
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| || |||||||||    
T  20944478 taaaataaattaggtgttggtgatacacggttagatctaatagatctcatttatcca 20944422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 20945391 - 20945454
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtcc 186  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||| || ||||||||| ||||||    
T  20945391 taaaataaattaggtgttggtgatacacagttagatctaatagaactcatttatccaacggtcc 20945454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 54372945 - 54372886
Alignment:
Q  126 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||| || |||||||||||||| ||||||||| |||||||| ||||||||| |||||    
T  54372945 aataaatcaggtgttggtgatacacagttagatctaatagacctcatttatccaacggtc 54372886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 54373869 - 54373928
Alignment:
Q  126 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||| || |||||||||||||| ||||||||| |||||||| |||||||||| ||||    
T  54373869 aataaatcaggtgttggtgatacacagttagatcttatagacctcatttatccagtggtc 54373928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 49923679 - 49923741
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||| |  |||||||||||||| |||||||||||||||||| || |||||| |||||    
T  49923679 taaaataaatcacgtgttggtgatacacagttagatctgatagacctcatctatccaacggtc 49923741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 49922709 - 49922647
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||| |  |||||||| ||||| |||||||||||||||||| || |||||| |||||    
T  49922709 taaaataaatcatgtgttggtgctacacagttagatctgatagacctcatctatccaacggtc 49922647  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 17522013 - 17521960
Alignment:
Q  126 aataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||||||  |||||||||||||| ||||||||| ||||||||  ||||||||    
T  17522013 aataaattaagtgttggtgatacactgttagatctcatagaccttgtttatcca 17521960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 21570354 - 21570399
Alignment:
Q  140 tggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||||| |||||||||||||||||  |||||||| |||||    
T  21570354 tggtgatacacgattagatctgatagacctcctttatccaacggtc 21570399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 37642457 - 37642510
Alignment:
Q  126 aataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    ||||||| || ||||||||||||||  |||||||||||| |||| |||||||||    
T  37642457 aataaatcaggtgttggtgatacacaattagatctgataaacctcatttatcca 37642510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 46425918 - 46425971
Alignment:
Q  126 aataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||||||||||||||| |||||| |||| ||||||| |||||  ||||||||    
T  46425918 aataaattagatgttggttatacaccgttaaatctgatggacctcctttatcca 46425971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 48499565 - 48499525
Alignment:
Q  129 aaattagatgttggtgatacacggttagatctgatagacct 169  Q
    |||||||||||||||||||||| || | |||||||||||||    
T  48499565 aaattagatgttggtgatacaccgtaaaatctgatagacct 48499525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 22794237 - 22794292
Alignment:
Q  124 aaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    ||||||||| |||||||||||||||||  ||||||||||||||||| |||||||||    
T  22794237 aaaataaatcagatgttggtgatacacaattagatctgatagacctcatttatcca 22794292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 29409154 - 29409214
Alignment:
Q  125 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||||| ||||||| |||||| ||||||||||||||| || ||||||||| |||||    
T  29409154 aaataaattaggtgttggttatacactgttagatctgatagatctcatttatccaacggtc 29409214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 29408439 - 29408392
Alignment:
Q  132 ttagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||||    
T  29408439 ttaggtgttggtgatacaccgttagatctgatagacctcatttatcca 29408392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 4973715 - 4973653
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||| | ||||||||||||||| ||||||| |||||||||| || |||||| |||||    
T  4973715 taaaataaatcacatgttggtgatacacagttagatatgatagacctcatctatccaacggtc 4973653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 42520419 - 42520361
Alignment:
Q  127 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||  |||||||||||||| ||||||||||||||||||  |||||||| |||||    
T  42520419 ataaattatgtgttggtgatacaccgttagatctgatagacctcctttatccaacggtc 42520361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 47536771 - 47536826
Alignment:
Q  130 aattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||| ||||||||||||||  |||||||||||||||||  |||||||| |||||    
T  47536771 aattaggtgttggtgatacaccattagatctgatagacctcttttatccaacggtc 47536826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 19218895 - 19218957
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||||||| |||||||||||||| |||| |||| || |||||  |||||||| |||||    
T  19218895 taaaataaattaggtgttggtgatacactgttaaatctcatggacctcttttatccaacggtc 19218957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 29657192 - 29657130
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||| | || |||||||||||||| ||||||||||||||  || ||||||||| |||||    
T  29657192 taaaataattcaggtgttggtgatacacagttagatctgatagttctcatttatccaacggtc 29657130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 36396012 - 36395975
Alignment:
Q  126 aataaattagatgttggtgatacacggttagatctgat 163  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  36396012 aataaattagatgttggtgatacactgttaaatctgat 36395975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 29658528 - 29658584
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||||||| ||  ||||||| |||||  ||||||||||||||||| |||||||||    
T  29658528 taaaataaatcaggcgttggtggtacacaattagatctgatagaccttatttatcca 29658584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 32893645 - 32893597
Alignment:
Q  137 tgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||||||| |||||||||||||||||  | ||||||| |||||    
T  32893645 tgttggtgatacacagttagatctgatagaccacacttatccaacggtc 32893597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 46203568 - 46203624
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||| ||||||||||||||||||||| ||||||| | ||||| ||  ||||||||    
T  46203568 taaaattaattagatgttggtgatacaccgttagattttatagatctcttttatcca 46203624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 12364391 - 12364336
Alignment:
Q  124 aaaataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||||||||  |||||||||||||| |||||||||||||||||| |||||||||    
T  12364391 aaaataaattatgtgttggtgatacacagttagatctgatagacctcatttatcca 12364336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 12365933 - 12365994
Alignment:
Q  124 aaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||| || |||||||||||||| |||| |||||||||| || ||||||||| |||||    
T  12365933 aaaataaatcaggtgttggtgatacacagttatatctgatagatctcatttatccaacggtc 12365994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 370962 - 370907
Alignment:
Q  130 aattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||| ||||||||||||||  |||||| |||||||||| ||||||||| |||||    
T  370962 aattaggtgttggtgatacaccattagatttgatagacctcatttatccaacggtc 370907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 20921706 - 20921657
Alignment:
Q  130 aattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    |||||| ||||||||||| || ||||||| |||||||||| |||||||||    
T  20921706 aattaggtgttggtgatatacagttagatatgatagacctcatttatcca 20921657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1337 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1337
Description:

Target: scaffold1337; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 431 - 373
Alignment:
Q  127 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||| |||||||||||||||||||||| ||| ||| || ||||||||| |||||    
T  431 ataaattaggtgttggtgatacacggttagatatgacagatctcatttatccaacggtc 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 1038 - 1100
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||||||||| | |||||||||||||||||||||||||||| || | |||||| || |||||    
T  1038 taaaataaatttggtgttggtgatacacggttagatctgatatacttcatttattcaacggtc 1100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 769 - 707
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    ||||| ||||| ||||||||||||| || ||||||||||||| || | ||||||||| |||||    
T  769 taaaacaaatttgatgttggtgatatacagttagatctgatatactttatttatccaacggtc 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 682467 - 682405
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||| |  |||||||||||||| | |||||||||||||||| ||||||||| |||||    
T  682467 taaaataaatcaagtgttggtgatacacagctagatctgatagacctcatttatccaacggtc 682405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 683456 - 683518
Alignment:
Q  123 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtc 185  Q
    |||||||||| || |||||| |||| || |||||||||||||||||| |||||| || |||||    
T  683456 taaaataaatcaggtgttggagatatacagttagatctgatagacctcatttattcaacggtc 683518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 13561476 - 13561424
Alignment:
Q  127 ataaattagatgttggtgatacacggttagatctgatagacctaatttatcca 179  Q
    ||||||||| ||||||||||||||  ||||||||||| |||||  ||||||||    
T  13561476 ataaattaggtgttggtgatacactattagatctgatggaccttctttatcca 13561424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 13562214 - 13562250
Alignment:
Q  127 ataaattagatgttggtgatacacggttagatctgat 163  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  13562214 ataaattaggtgttggtgatacactgttagatctgat 13562250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 34995556 - 34995512
Alignment:
Q  125 aaataaattagatgttggtgatacacggttagatctgatagacct 169  Q
    ||||||||||||||||||||||||||  | | |||||||||||||    
T  34995556 aaataaattagatgttggtgatacactataaaatctgatagacct 34995512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 104456 - 104412
Alignment:
Q  125 aaataaattagatgttggtgatacacggttagatctgatagacct 169  Q
    ||||||||||||||||||||||||||  | | |||||||||||||    
T  104456 aaataaattagatgttggtgatacactataaaatctgatagacct 104412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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