View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10388_low_2 (Length: 456)
Name: NF10388_low_2
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10388_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 46533705 - 46533935
Alignment:
| Q |
14 |
agcaaaggtctagtaaaagttgaaagcacatcttccctccaagggactttgtatgatgaccatgtggtgaatggt---gccttcttcatatacgcattgc |
110 |
Q |
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| T |
46533705 |
agcaaaggtctagtaaaagttgaaagcacatcttccctccaagggactttgtatgatgtccatgtggtgaatggtggtgccttcttcatatacgcattgc |
46533804 |
T |
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| Q |
111 |
ctatacatctgcttgtctgtcaagtcaacaagcaatgagtagcttagaagtgaatcacaaataattaaaataatatagtatagataaaactcaatcaata |
210 |
Q |
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| T |
46533805 |
ctatacatctgcttgtctgtcaagtcaacaagcaatgagtagcatagaagtgaatcaaaaataattaaaataatatagtatagataaaactcaatcaata |
46533904 |
T |
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| Q |
211 |
atgtgcatacgtaaagaattaaatatattat |
241 |
Q |
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| T |
46533905 |
atgtgcatacataaaaaattaaatctattat |
46533935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 249 - 441
Target Start/End: Original strand, 46534031 - 46534223
Alignment:
| Q |
249 |
ttatgttatcgaacactatttcttttaccagagattagttgtatatgaagtgaagaagaggactgaagttgatcccagaaaagaggtttcttggagaccg |
348 |
Q |
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| T |
46534031 |
ttatcttatcgaacactatttcttttaccagagagtagttgtatatgaagtgaagaagaggactgaagttgatcccagaaaagaggtttcttggagaccg |
46534130 |
T |
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| Q |
349 |
ccggaatggacagcgcagccgcatctagcggcaaaaaagaaatgaagtattgggagcagcattctcacttaatcagactcccatggtatgact |
441 |
Q |
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| T |
46534131 |
ccggaatggacagcgcagccgcatctagcggcaaaaaagaaatgaagtcttgggagcagcattctcacttgatcagactcccacggtatgact |
46534223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 37041583 - 37041504
Alignment:
| Q |
88 |
tgccttcttcatatacgcattgcctatacatctgcttgtctgtcaagtcaacaagcaatgagtagcttagaagtgaatca |
167 |
Q |
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| T |
37041583 |
tgccttcttcatgtacgcatttcctatgcatctgcttgactctcaagtcatcaagcacatcttagcttagaagtgaatca |
37041504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 37045298 - 37045249
Alignment:
| Q |
122 |
cttgtctgtcaagtcaacaagcaatgagtagcttagaagtgaatcacaaa |
171 |
Q |
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| T |
37045298 |
cttgtctgacaagtcaacaagcaatgagcagcttagaaatgaataacaaa |
37045249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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