View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10388_low_3 (Length: 374)
Name: NF10388_low_3
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10388_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 33303028 - 33302674
Alignment:
| Q |
1 |
ttatctacaatgttctatagcatatattctattctacttcattaatcatgatagaatagttactactattattattccctctaaggttgtgttgggtgga |
100 |
Q |
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| T |
33303028 |
ttatctacaatgttctatagcatatattctattctacttcattaatcatgatagaatagttactactattattattccctctaaggttgtgttgggtgga |
33302929 |
T |
|
| Q |
101 |
ctagannnnnnnaccgtcattcaaggtttgttttgtgatattctcaaatatgaattattggttgtgttttgaaatgggagaattaaggtgatatttgtca |
200 |
Q |
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| T |
33302928 |
ctagatttttt-accgtcattcaaggtttgttttgtgatattctcaaatatgaattattggttgtgttttgcaatgggagaattaaggtgatatttgtca |
33302830 |
T |
|
| Q |
201 |
tgaaaaattagattgaaaggagatagctaggaagtgattgtttgtacgtcacaagaagattgtggctgaaaacggtgaacaattcattttctaaaattga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33302829 |
tgaaaaattagattgaaaggagatagctaggaagtgattgtttgtacgtcacaagaagattgtggctgaaaacggtgaacaattcattttctaaaattga |
33302730 |
T |
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| Q |
301 |
agtaacttgtaatgacacgtcataatcatcatttttaatttgaatcgaagtggaat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33302729 |
agtaacttgtaatgacacgtcataatcatcatttttaatttgaatcgaagtggaat |
33302674 |
T |
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